K22337

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22337

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22337

Determination of introduced cDNA(s)

  • J013001I07 - Rice Full-length cDNAs - Original: J013001I07

    full reading [+] show sequence

    Nucleotide sequence: J013001I07 - full reading
    GAAGGAGGAG GCAGGAGGCT GCCATAACTC CGCCCGCAAC CTCCGCTCTC 
    TGTCTCGCGG TGACCTCGTA CGTACCCCCG CGCTAGCTGT TAATGGAAAC
    GCCGCGCCCT CTCCTCCTCC CTTCCCATCA TCCTCCCGCG GCCTCGCCCT
    CCTCTTCTTC TTCTTCCTCC TCCTTCCCCT ACAGATAGCG AAGCGAGATG
    GATTGTTGTA GATAGGATAC GCATACTGTG GCTCTTCCCC CCTAGCTTCT
    TCCATCTCCT CGATCGTGTT CAGTTTGATT TTGGTTTTCG CTTGTCACTG
    TGTGGGTGGT GGTGTTGTTG GCCATGGCGA GGAGTGGTGG GGAGTTGGTG
    GTGGTGGAGG AAGACGATGA GTACGCCAAG CTGGTCAGGA GGATGAACCC
    ACCCAGTGTT GTGATAGACA ATGACTCGTG CGACAGTGCA ACTGTCATCC
    GGGTTGATAG GGTCAAGAAG CATGGCATTT TACTGGAGGC TGTTCAAGTA
    CTTGTGGACC TCAACCTCGT CATCACCAAG GCTTACATTT CTTCAGACGG
    CAACTGGTTC ATGGACGTGT TCAATGTGAC CGATCAGGAC GGCAACAAGG
    TGCAGAACAA GGAGGTCACT GACTGCATTA AGAAATGCTT GGAGTCGGAG
    GATTACCTCG TGCTGCCGGC GAGCTCGCCG GCCGGCGGCG CTGCGCCGTC
    GGAGGAGACC ACCTGCATCG AGCTCACCGG CACCGACCGG CCGGGGCTCC
    TCTCCGAGGT GTGCGCCGTG CTGGCTTCGC TGAGGTGCAA CATCGTGAAC
    GCCGAGGTGT GGACGCACGA CCGCCGCGCC GCCGCCGTCA TCCAGATCAC
    CGACGAGGCC ACCGGCCTCC CCGTCCGCGA CGGCGGGCGG CTGTCCCAGC
    TGCAGGAGCT CCTCGGCAAC GTCATGCAGG GAGACGGCGA CGGCGGCGGT
    GACAGCAGGA AGGGCAGCAC GGCCGTGTCG CTGGGCGCCG CGAACGCCGA
    GCGGCGCCTG CACAGGCTCA TGCTCGACGA CGGCGACGCC GGCCGATGCG
    GCGAGGAGCG GGGCGGCGTG GCGGCGGCGA AGGCGAAGGC GAAGGTGGTG
    GTGATGGACT GCACGGAGCG GCGGTACACG GTGGTGATCC TCCGGTGCAG
    GGACCGGCCG CGGCTGCTGT TCGACACGCT GTGCGCGCTC ACCGACCTGC
    ACTACGTCGT CTTCAACGGC ACCGTCGACG CCGAGGGCGG CAGCGCCAAG
    GAGGCCTACC AGGAGTACTA TGTCCGGCAC GTCGACGGCC ACCCGGTGCG
    CTGCGACGCC GAGCGCCTCC GCCTCGTCCG CTGCCTCGAG GCCGCCGTCG
    AGCGCCGCGC CTCCGACGGG CTGGAGCTGG AGGTGAAGAC GGAGGACAGG
    GCGGGGCTCC TGTCGGAGAT CACGCGTGTG TTCCGGGAGA ACAGCCTGTC
    GATCATCCGG GCGGTGATCA CCACCAAGGA CGGCGAGGCC GACGATACCT
    TCTACGTCTC CGACGCCTAC GGCAACCCCG TCGACGGCAA GGCCATGGAG
    GCGCTCGGCG AGCAGCTCGG CCACGCCGTG CTGCGCGTCA AGAGCAACGG
    CCGCGCCGCC ATCAACCGCG CCGAGGACAG CGGCGGCGGC GGCGCGGCGG
    CCATCATTGG CAACCTGCTC AAGGGCTCGT TCCAGGGGTT CAGGCTCATC
    AGATCCTACT CCTGAAAAAA AAAATTGCTC ATTTTCTCAC CAAGAAGATC
    AGAAACACGA CCTTGTTCAT ACATAAGAAT CTGACGACTT TAGCTTAGGA
    AATAAATGGA GAATGGGGTG ATGTAAATAG TCTTGTGGAT ATCTGAAAAC
    GCCATTGCTT CTTCAGCATC ATACACTTAG GTTAAGGTTA ACTTGCATTG
    TACATATAAT TTGTAAAGTG GTTCTCATCT AAAATTTGTG GTTAAACCCC

    Gene models with high sequence identity

    1. AT1G69040.2 [+] show detail - ACT domain repeat 4
      E-value: 1e-118; Score: 424.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 0.00034
    superfamily ACT-like 2.6e-15
    superfamily ACT-like 4.4e-11
    superfamily ACT-like 3.4e-10
    HMMPfam Amino acid-binding ACT 3.7e-05
    HMMPfam Amino acid-binding ACT 6.4e-09
    HMMPfam Amino acid-binding ACT 1.9e-07

    See the detailed result >

    AT1G69040.2

    Model type
    Protein coding
    Short Description
    ACT domain repeat 4
    Curator Summary
    ACT-domain containing protein involved in feedback regulation of amino acid metabolism
    Computational Description
    ACT domain repeat 4 (ACR4); FUNCTIONS IN: amino acid binding; INVOLVED IN: regulation of cellular amino acid metabolic process, response to cytokinin stimulus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 5 (TAIR:AT2G03730.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR