K22348

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22348

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22348

Determination of introduced cDNA(s)

  • J023099H07 - Rice Full-length cDNAs - Original: J023099H07

    full reading [+] show sequence

    Nucleotide sequence: J023099H07 - full reading 
    GTCATCGACT CGACGACGAC GACGCATTCC GAATTATTCA AGAAATTCAA 
    GAAGTGAACA GAGGAGGAAA GGAAACATGG CTTCGTTTGC ATCCACGGCG 
    GCGCCTTGGG GATGCGTCGC CGGAGCTCGG CGTGGCGGCG GCGGCGGCGG 
    GCGGTGTGGG GTGCGCGCGT CCGCGGCGCT GGCGGTGGCG GCGCCGGCGG 
    CGAGGACGCA CTACGAGGTG CTCGGGGTCG GGGCGGGCGC GAGCAGGGGG 
    GAGATCAAGG CGGCGTACCG GCGTCTGGCG AGGGAGGTGC ACCCGGACGC 
    CGGCGCCACG GGGGACGAGG ACTTCATACG GCTCCACGCC GCGTACGCCA 
    CGCTCGCCGA CCCCGACGAG CGCGCGCGGT ACGACCGCGC CATGGCCGGC 
    CCGGCGGCGT CGGCGTTCCG GCGGGCGCCC GCGTCGTCGT TCCGGCGGCG 
    GACGTGGGAG ACGGACCAGT GCTGGTAGGG CAGAAGCACA ACTCCGGTGC 
    TCCCTGCCCT ACTGCGCCGC GCTCTCCGCC GCCGGAGCTC CGTCGGGCAC 
    GGCGGTTTGC CGGCGAGTGA CGTGGGATTC TGTCGGCCGT CGGATCCATC 
    ATAGAAGGCC CAGATCGAAG AGGAAAAGAG GAAGCGGAGC GAGATATTTG 
    CAGGGGAGCC CTCCATTTAC CATCTATTGT CAACAAGGTC CTCCCGCGAC 
    CATCTCGGCC GTTCGATCGA CTTGTGCGGC GCAGATTGAG CCAAAAAGAG 
    AGGCGCAGTG CGGATGTTTT CCTATGGGAC CCTCAAGTAT TCGGTATTAT 
    CAAGCATACC CCCATCCCGC CGCCGGCGGC GGCGGCGGCG GAGCAAAGTG 
    TTGCCGCGCC GGCGAGTACT GCGGTGATCG CCGGCGTTTC GTGGGGATAA 
    CACCGCTAAT GCATGGTTCT TCTCCTGCAA TCCTGTGTAT ATGCTGTAAC 
    ACGAAGAGAG GCAATTTTAG AGAACTCTTT TGTGTGCTGA TTAGCTTGTT 
    TATATAATAG GTTTTAGCTC TGTCTCTCTC AACTGTAAAT GATCAAGAAA 
    CTATTGTTTC TTCTCTTTCC TTTTCAAATC ATCATCGTTG AGTACTAATT 
    TGAAGAACAC TCGAATGTGT ATCTTTGGTG ATTCAAGTTT TTTAATTTTT 
    GCAGTTACCT GAATAAGCAT TTCTAGTTTT TGCATC

    Gene models with high sequence identity

    1. AT2G17880.1 [+] show detail - Chaperone DnaJ-domain superfamily protein
      E-value: 0.0000000000004; Score: 72.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Heat shock protein DnaJ, N-terminal 2.2e-16
    HMMPfam Heat shock protein DnaJ, N-terminal 4.3e-18
    FPrintScan Heat shock protein DnaJ 0.0000000016
    FPrintScan Heat shock protein DnaJ 0.0000000016
    HMMPanther CHAPERONE PROTEIN DNAJ 0.0000000000000015
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 0.0000000000000015
    superfamily Heat shock protein DnaJ, N-terminal 9.3e-20
    Gene3D Heat shock protein DnaJ, N-terminal 2.4e-16
    PatternScan Heat shock protein DnaJ, conserved site 0
    ProfileScan Heat shock protein DnaJ, N-terminal 17.254

    See the detailed result >

    AT2G17880.1

    Model type
    Protein coding
    Short Description
    Chaperone DnaJ-domain superfamily protein
    Computational Description
    Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19677 Blast hits to 19677 proteins in 3133 species: Archae - 135; Bacteria - 8632; Metazoa - 3284; Fungi - 1660; Plants - 1836; Viruses - 5; Other Eukaryotes - 4125 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR