K22408

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22408

Determination of introduced cDNA(s)

  • J013098P05 - Rice Full-length cDNAs - Original: J013098P05

    full reading [+] show sequence

    Nucleotide sequence: J013098P05 - full reading
    GACATCACCT CCATCTCGAG CACTCGAAGT TGGAACTCGA GCTCATCCAT 
    GGCCATCGCG ACGACGACCT TACCACTCGC GCCACTCGCC CTCGCGCCGC
    CATCCTCCCC GATCTCCCAG TGCTCGCTCC TCCTGCTGCG CCCCCGCGCC
    CCGGCCGCCC TCTCGCTCCG CCCCTCCGCG CGCCTCCTCG TCGCCGTCGC
    GGCCAGGGAG CCCGAGCTCG GCGGATCGGG AGGCGGAGGC GCAGGCGACG
    GCTCTGGGAG CGGCGGCGGC GGGGACAGCG AGAAGCCGCG GGGTGGTGGG
    GGCGACGAGG AGGGGGAAGG GGAGGAGGAG AAGATGGGGC AGGGGCTCTC
    CATGTCGCAG AAGATCACCC TCGCCTACGC CGCTCTCGTC GGAGCCGGTG
    GAGCGATGGG GTACATGAAG AGTGGAAGCC AGAAATCCTT AGCCGCAGGA
    GGCATATCAG CCCTGGTCCT GTACTTCGTC CACACTCAAC TCCCAGTGAG
    ACCTGTCTTT GCATCATCTA TTGGTTTAGG TATATCTGCT GCCCTCTTGT
    CGGTCATGGG ATCTCGCTTC AAGAAGTCCG GGAAGATATT CCCAGCTGGT
    GTCGTTTCCC TCGTCTCCTT GGTCATGGTC GGTGGTTACA TCCATGGGAT
    CTTGCGCAGC ACTCATGCAT GACAAACTGA CAGTAGCCGT GGCAATCACT
    ATATGCAACT CCCTACCTAA GCCTCATGTT TCCCTTCCGT TTTTGTGTTT
    TAGAATCTGC AGCAACTGTG TGACATTCTC CTTCTTGATC ATGTACCTGT
    GTTGTGGGCG TAGTTCACTC CTTTTCTGGT ACAATATGGC CTATGGTTAA
    GCATGTGAGA TGCTAGATGG AAAAAATAAA AGGTTTGGTG AATCTGTCTT
    GAATTTTGAT TG

    Gene models with high sequence identity

    1. AT3G43520.1 [+] show detail - Transmembrane proteins 14C
      E-value: 4e-20; Score: 95.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Uncharacterised protein family UPF0136, Transmembrane 8.5e-25
    HMMPfam Uncharacterised protein family UPF0136, Transmembrane 4.8e-22

    See the detailed result >

    AT3G43520.1

    Model type
    Protein coding
    Short Description
    Transmembrane proteins 14C
    Computational Description
    Transmembrane proteins 14C; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0136, Transmembrane (InterPro:IPR005349); BEST Arabidopsis thaliana protein match is: Transmembrane proteins 14C (TAIR:AT2G26240.1); Has 541 Blast hits to 527 proteins in 134 species: Archae - 4; Bacteria - 94; Metazoa - 236; Fungi - 13; Plants - 153; Viruses - 7; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR