K22413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22413

Determination of introduced cDNA(s)

  • J023062G17 - Rice Full-length cDNAs - Original: J023062G17

    full reading [+] show sequence

    Nucleotide sequence: J023062G17 - full reading 
    GGGTGCCGCG AGCGCTCATG TGGGCCCCCT CCTTCAAGCT TCCAACTGCA 
    ACTTCCCCGG CGAGGCGGAG GCGCCGCCGC CGCGGCGGCG GCGGCGGCGC 
    AGCGTGAGAC TAAGGAAAGC CGATAGATCG GCGGAGTATC GTACGTGTCA 
    GCGACGGCCT GCCTTCGAAG GCCGTGTGAT CATGTTACTG AATGTCGATC 
    GCCTAATCTT GTTTTCGACT GTTGATTAGC CAAGAGGGAG GGGATTATAG 
    GCTTTCTTCT GTGGCAATGA ATTTGATAAA GCATGCAGCT TTTGCTGCAA 
    GTTTTCAAGG GGAAACGGAT TGTACCTCAC ATGCATCAGC TAGGAAGTTC 
    AGCACCTCAG GATCTTCCCC TCTGCTAGAC TCAACCGAAG GAAATGGGTT 
    TAAGGGACAC TCCATGCTGG CACCATTCAC TGCCGGATGG CACTCCACAG 
    ACCTGGAGCC CTTGATTATT GAAAGATCAG AGGGTTCTTA TGTCTATGAT 
    AGCAAGGGGA ACAAGTACTT GGATACACTA GCAGGATTGT GGTGTACAGC 
    CTTAGGTGGC AGTGAGCCTC GGTTAGTGAA AGCAGCAACC GACCAATTAA 
    ACAAGTTGCC GTTCTACCAC TCCTTTTGGA ACAGTACAGC CAAGCCACCA 
    TTGGATCTTG CTGAGGAACT TATCAGCATG TTCACTGCCA AGGAAATGGG 
    AAAAGTGTTC TTTACAAACA GCGGTTCTGA AGCAAATGAC TCTCAGGTCA 
    AACTAGTATG GTACTATAAC AATGCATTGG GGAGACCAAA CAAGAAAAAG 
    ATCATTGCAC AATCACAAGC ATATCACGGA TCAACATTAA TATCAGCTAG 
    TCTGTCTGGC CTCCCTGCGA TGCATCTGAA GTTTGATCTA CCAGCACCTT 
    TTGTTCTGCA CACAGACTGC CCTCACTACT GGCGCTTCGG TCTTCCTGGT 
    GAGGCAGAAG AAGAATTTGC AACCAGACTT GCCGATAATT TAGAGAATCT 
    TATCCTCAAA GAAGGGCCAG AAACAGTTGC TGCTTTCATT GCTGAACCTG 
    TAATTGGTGC TGGAGGTGTC ATCCCTCCTC CAAAGACATA TTTTGAGAAG 
    ATTCAAGCAG TACTTCAGAA GTACGATGTC CTTTTCATAG CAGATGAGGT 
    AATTACTGGA TTTGGACGGC TGGGAACCAT GTTTGGATCT GATCTGTACA 
    ACATCAAGCC AGATCTCGTC TCCTTAGCAA AGGCACTCTC ATCTGCGTAT 
    GTCCCAATTG GAGCGACTCT TGTCAGCCCA GAAATATCCG ATGTAGTTCA 
    TTCTCAGAGC AATAAGATTG GCTTTTTTGC TCATGGCTTT ACATACTCTG 
    GCCATCCAGT TTCTTGTGCT GTCGCCCTAG AAGCTCTGAA AATTTATCGG 
    GAAAGGAACA TCCCTGCTCA TGTCAAGCAA ATTTCTCCAA GGTTCCAGGA 
    GGGAATCAAG GCCTTCGCGG GAAGTTCAAT TATAGGAGAG ACACGTGGTG 
    TAGGTTTGCT GCTCGCGACT GAATTTGCTA ATAACAAATC ACCAAATGAT 
    CCATTTCCTG TTGAGTGGGG AGTTGCGCAA ATCTTTGGAG CAGAGTGTAA 
    GAAGCGTGGT ATGCTAGTTA AGGTTGTTGG AGATGAGATC GCCATGTCGC 
    CACCACTAAT AATGAGCCAA AGAGAAGTTG ATGGACTGGT GAGCATATAC 
    GGTGAAGCTT TGAAGGCCAC CGAGGAAAGA GTGGCAGAGC TGAGGTCCAA 
    GAAAAAATAG TTAAGAGACA TTTGTTGTAA AAATAATGAT AATATTACCA 
    ACAATTTTTG TAAGCTGGTG CACACAATAA TTTTGTGTTG TTTTTTATTC 
    TAATAATTCG CTGAAATGTT ACTTCTTGCA AATAAAATGT GATATTTTAT 
    TTTTCC

    Gene models with high sequence identity

    1. AT3G22200.2 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 0; Score: 696.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AMINOTRANSFERASE 8e-208
    HMMPanther Aminotransferase class-III 8e-208
    superfamily Pyridoxal phosphate-dependent transferase, major domain 3.8e-117
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 7.8e-78
    HMMPfam Aminotransferase class-III 1.9e-85
    PatternScan Aminotransferase class-III 0

    See the detailed result >

    AT3G22200.2

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Curator Summary
    Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. Encodes gamma-aminobutyrate transaminase that uses pyruvate instead of alpha-ketoglutarate as cosubstrate. Mutations in POP2/HER1 render roots resistant to the inhibitory growth effects of the volatile organic compound E-2-hexenal implicated in plant defense.
    Computational Description
    POLLEN-PISTIL INCOMPATIBILITY 2 (POP2); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 1 (TAIR:AT1G80600.1).
    Link
    InterPro Scan - TAIR