K22418

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22418

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Original: K22418

Determination of introduced cDNA(s)

  • J033076E07 - Rice Full-length cDNAs - Original: J033076E07

    full reading [+] show sequence

    Nucleotide sequence: J033076E07 - full reading 
    GCCTCACTCC CCCCCAACCT CCCTCTCCCT CTCTACACTA CTCGCAGCCG 
    CATCGGCTGC CAGCCAGCCC AGCGCGGTGG TTGTTGGGTG GTTGCCTTCT 
    CCCCTCCCCA CCACCACCAT CTTCTCACTG ATCTCTCCAC GCCGATCCAT 
    CCATCCACCG ATCGCCTCCC CTCTCCCGCA CTGATCAGTA GTGGTAGAGT 
    GAGTTGAATC TTGGCCGTGA TCGATCTTGC TGGGATCTGA TAGGGGTGGG 
    AGTCAGTGGA GGGATGGAGG GGGAGGACGA GGTGAGGGTG AATGGGGCTG 
    TGGAGGTAGC GGAGGTGGTG GCGGAGGGGG ATCTCGCCAG TGGGGGGGAG 
    GCGGCGGCGG CGGGTGGATC TGATCAGGCG GTGGTGGTGG TGGCGATGGC 
    CGCGGAGGGG ACGACGGCCA AGAAGGGCGG ATCGGGGGGC GCGGCCGCGG 
    CGAGGAAGGC GAAGGTGGCG GCGGCGGTGG CCAACGGCAA GGTGGGGAAG 
    AAGCCCGCGC TGTCGCAGAG CGCGTCGTTC CCGGCGAGAG GGGCGGCTGC 
    CAAGAAGGCG GCGACACCAA AGCAGGCCAA GACGACGGAC GGGAAAGGCG 
    CTGTGCCCAA TGGATCGGAG AAGGCGGCTG GGCGAGCCGT GGAGAAGAAG 
    GTGAATTCAG CCCGGACGCC TGCCGCAAGC CGCTCCTTGC CTGTTAAATC 
    TGGATCGGTG GACGCGCCTC CAAATGATGC TTCTCCTGAA ACCCAAGAGT 
    CAAACGAGAA CACCACAAAT GCTTTGGAAC AGACTCTGCC AGAGAAAATG 
    GAGGATGATG TGCACTCCAC CACATCGAGT ACCAATACTC CCCGAGCAGC 
    TGCTCAACGC AAGAATGCTG CTGCTGCTGC TGGTTTTAGT TTCAGGCTGC 
    AGGAGCGTGC TGAGAAGAGG AAGGAGTTCT ACCAAAAACT TGAAGAGAAG 
    ATCCATGCAA AGGAGCTTGA ACAAACAAAT TTGCAGGCAA AATCTAAAGA 
    GAGCCAAGAG GCTGAGATCA AATTACTTAG GAAGAGCCTG ACATTTAAAG 
    CGACACCCAT GCCAAGCTTT TACAAGGAGC AACCTCCTAA AGTTGAGTTG 
    AAAAAGATCC CACCAACACG CGCTAGGTCA CCAAAGCTTG GCCGGCACAA 
    GCCAACCAAT TCTGCTGCTG CTGCTTCTGT TGATGGTTCT GTATCATGTG 
    AGAGTCCTCG GAGCATAACT AATTTGGCCA AATTGACCGA AAGCACAGAA 
    AATAACAAAC CTCATGCTAC TGCCAGAAAG CCTGCTCAAA GATCAGTCAC 
    AAAAATTCCT TCCCAAGCAT CTGCCACTGC AAAGACCGAG ACAAAACCCC 
    TTGTGACAAA GCAGAAAACC TCAAACACAA AACCAAAAGC TCCAAGAGCC 
    AAGGTAGAGC AATTGCAAGA CAACTCGGTT GAAATCCCTC CTGCTGAACC 
    TTCTGGCCCA GAGGGGCTCA CTGTTGAACA TGGTGTTGAG GATGCAACAG 
    GGCCAGACCG GGCCACCACT TTGGTTGCTT CGAATGAAGT TCCAGTCCAA 
    GGTTGATTCG ATTGCACATT TGGTTATTTA ATCCCTTCTT GCAGTCTTGT 
    GAATAGTGAG GTGTGTGCTT CATGGAAAGT TGATTCGCTC AAAGTACCGT 
    GGATTTGTCA TTTCCGGAGT AGACATCCCC TTTTTTTCAG CTTGTCATTA 
    AGCATTCCAT TGTATATTGC TTGAAAATTT GTTCATGTTA AAATTTTATT 
    TCTTGTGTAT ATTGGAGTTA TATGTCAATG GGCAGGCTAG GACTGTTGCA 
    GAACATCAAT GCAACTTGTG AATTATTTTG TGTTATAAGT TGATTCTCCT 
    TGGTCCTTGC CCAGT

    Gene models with high sequence identity

    1. AT2G35880.1 [+] show detail - TPX2 (targeting protein for Xklp2) protein family
      E-value: 1e-48; Score: 191.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 6.7e-10
    FPrintScan PRICHEXTENSN 6.7e-10
    FPrintScan PRICHEXTENSN 6.7e-10
    FPrintScan PRICHEXTENSN 6.7e-10
    HMMPfam Xklp2 targeting protein 2.7e-20
    Coil coiled-coil 0

    See the detailed result >

    AT2G35880.1

    Model type
    Protein coding
    Short Description
    TPX2 (targeting protein for Xklp2) protein family
    Computational Description
    TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.3); Has 16554 Blast hits to 10282 proteins in 807 species: Archae - 18; Bacteria - 1410; Metazoa - 6904; Fungi - 1967; Plants - 895; Viruses - 63; Other Eukaryotes - 5297 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR