K22419

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22419

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22419

Determination of introduced cDNA(s)

  • J023050P10 - Rice Full-length cDNAs - Original: J023050P10

    full reading [+] show sequence

    Nucleotide sequence: J023050P10 - full reading 
    GATTATACTA TATATATACT TCTGTATTTG TGCACAGTGT TGGTACAGGT 
    ATCTGCAGAC AGCCATATCT ATCTTTCTAG CTAATTGGCA ATATGCCTGA 
    AGTCCACTGC TCGTCCTAAG ATTTACTTCT CCACCCCCCC CCCTCTCCTT 
    TGCTTCTTCT TCTTCATCAT CATCTTCTTC CTCCTCCTGT TAATTAAGTT 
    CTTGATTTCT AAGCTAGCAA TTGAGCACAC ATCGATCGCG AGAGACGCAG 
    CGGCGCCCGT CTACCGCGGG GCTAGAGGAA TGTCGGCACA GATCGTGCCG 
    GCGCCGGAGC ATGTGTGCTA CGTGCACTGC AACTTCTGCA ACACAATTTT 
    CGCGGTCAGT GTTCCAAGCA ATAGCATGCT AAACATCGTG ACCGTCCGTT 
    GTGGCCATTG CACTAGCCTG TTGTCAGTGA ACTTGCGAGG ATTGGTCCAA 
    GCACTCCCAG CAGAAGATCA TTTACAGGAC AATTTGAAGA TGCACAATAT 
    GAGCTTCCGC GAAAACTACT CTGAATATGG CTCATCTTCC AGATATGGCC 
    GAGTGCCAAT GATGTTCTCA AAAAATGACA CAGAGCATAT GCTGCACGTG 
    CGACCTCCAG AGAAGAGGCA GCGGGTTCCT TCAGCTTATA ACAGATTTAT 
    CAAGGAAGAG ATCCGGAGGA TAAAAGCAAA CAATCCTGAC ATAAGCCACA 
    GAGAAGCCTT CAGTACTGCA GCAAAGAATT GGGCGCATTT CCCGAACATC 
    CATTTCGGGT TAGGCTCCCA TGAGAGCAGC AAGAAGCTCG ATGAGGCCAT 
    TGGAGCTCCT AGTCCCCAAA AGGTTCAAAG GCTGTATTGA TCGAGTACAC 
    ATGATGATCG ATGGATCCTA CGTGCTTGTT GATCTCATGT TGTAAGTAAC 
    TTAATTAAGA AAAAAAGTCT ACGCTTATTT ATTTCTTAAG TATCATCAGT 
    TAAATTTGTG AGCGAGTATA TAGATGAGTT GTCATGATCA GTGAGTGATC 
    GTATGCATGC AGTGCTGAGA ATTAAAGGTG TATATGCATG AGTAACGTTA 
    CATGCAGCTA GTGTCGACGC ACGTATGACA GACTGAATAA ACTCTTCACC 
    ATGTTGTTTT TTTATGTTTG AAATGAATTA ATTAATTGTC C

    Gene models with high sequence identity

    1. AT2G26580.2 [+] show detail - plant-specific transcription factor YABBY family protein
      E-value: 6e-43; Score: 171.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam YABBY protein 1.4e-76
    superfamily High mobility group, superfamily 8e-08

    See the detailed result >

    AT2G26580.2

    Model type
    Protein coding
    Short Description
    plant-specific transcription factor YABBY family protein
    Computational Description
    YABBY5 (YAB5); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT1G08465.1); Has 458 Blast hits to 449 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 444; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR