K22422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22422

Determination of introduced cDNA(s)

  • J033102J01 - Rice Full-length cDNAs - Original: J033102J01

    full reading [+] show sequence

    Nucleotide sequence: J033102J01 - full reading
    GGGCCGTCGC GCTCCGCTTT TCCTCCGCCG CCGCCTCCTC CTCATCCCTC 
    CTCCCGCGGA GAGGAGAGGA GAGCCGAGAG AGGAAGTGGA GCAATGGCGG
    CCGCGGCGGA GGGCGATGAG GACCCGCGCT GGAGGAGGTG CAACACCGAC
    TGCGTCTACT TCCTCGCCTC CCCCTTCACC TGCACCAAGG GGTCCAAGTG
    CGAGTACCGC CATGCCGATG GCGCCCGGTT CAACCGCCGG AATTGCTGGT
    ACTGGTTCAA GGGCAACTGC GTCAACCCGA GCTGCACATT TCGTCACCCC
    CCACTGGAAA ACTTAAACAA AACCAAATCT TTAGCAGACC CACTCTCATT
    GTGTTCTACT TCTGTCAAGG CAGCTAACCC TTGTTATTTC TACTATAACT
    CGCACTGTTC AAAAGGTGAC AATTGCCCCT ACCTCCATGA GCCTCTAACT
    TCTAATGATG CTGTGGGAAC TTCTTGTAAA GCTACCACTT CCAATCCTGC
    TGTAAGTAAA AGTTATGTTG GAGATGAGAT GGTTGAAGAA TCGAAAGACA
    CTATCACAAA TCCCTGTCAA GATACCTCTT GCCATATAAA AGAAGTTCCT
    GTGTCAATCA ATCCTGAATT TGGTGAAGCT GAAGCTGTTT CCGGTGCACT
    TGAAACATCA ACTGATATAG ATGAATACAT GAAATGTTCC GCAGTCTCAG
    ATCTTAATTC AGGAGATTCA ACTATGGACC ACACAGAACA AGATGAGCGT
    GATTCCTCTC CTGGATTTGA TGTGCTTGTG GATGATTGCC TCTCTAACAA
    GAGTGATCTT GAACATCAAT TGACTACAGA GAGTGATAAT AAGGTGCTTC
    ATGCAGAATA TGGTATTAGA GATCCAGTTC TTTATGATAT GTATTACCAT
    GATCCAGAGT ACTATAACTA TGAACCAGAA TTTTGTGGTC TTGATGATCG
    GCAAGGTTAC CTTTATCTTT GCCAGCCTAA CGGAGCTCAT GAGCATGAAA
    GTGAGATCAC TTTGGGGCAT TTACTACCAC AAAATACTGA GGTCACTTCT
    GATGAATATG ACAGAAGGTT CTTCAATCCC AGAAACTTCA CCAGCTCAGT
    GGCAGATACT AACTTTGTTC ATCAGCACAC CCAGATTAGA CACATCTCAA
    AAAGAAGACC TGAGAATAGA AAAGGTGCAA AGGGAAAGAA GGATTGCATT
    AAGAGAAGCC GTTGCCTTGA ACCCAAGAAT AGTACTCAAC AGATTGAATC
    AATGCCAACT CGTCAAAGGA AAGATTATTT GATGGGAGAG TGTCCTCAAC
    CTGCTAACCA TGCTACTTTC AGGGGACGGA GGAAGAAAAA TAGAGGAAAG
    CAACAGCATG TTCTTTCTGC TAAATCTTCT GAACATCCTA CTGCAGATTT
    TACTGGGCCG AAGACCCTTG CTCAGATAAA AGAAGAGAAA TGTAAATCCA
    ACTCAAGTTT TAGCCACTCC ACTGCTTGCA CGCCTAATGT GAGATCCTTC
    TCAGATGATT TTGAGGGGCC CAAATCTCTG ACCGAGCTTC TCATGACTAA
    GAGTAGGAGT TCTGTTGGCA AGTGACCATA TCCTAGCAAG TGTTTATGTA
    AAAGTGCAGC TCAGTGAGAT TTCTGCTTTA CTTGGTTAGG ATGATGCCAA
    CAGTTTTTTT TTTTTTTTTT TGAGGATGAA AGCAATTCAG TCAAAAGGTC
    ACAGAAGGTC TAGTGACAAC TTTCTTTGAA CAAATTCTTA TGAGTTAACC
    TGCCAGTGAA TGTGCGGATG AAGAAGGGAT CCATATTAAG G

    Gene models with high sequence identity

    1. AT2G02160.1 [+] show detail - CCCH-type zinc finger family protein
      E-value: 3e-31; Score: 133.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, CCCH-type 0.56
    HMMSmart Zinc finger, CCCH-type 4.1
    HMMSmart Zinc finger, CCCH-type 0.48
    ProfileScan Zinc finger, CCCH-type 9.714
    ProfileScan Zinc finger, CCCH-type 10.85
    ProfileScan Zinc finger, CCCH-type 13.291

    See the detailed result >

    AT2G02160.1

    Model type
    Protein coding
    Short Description
    CCCH-type zinc finger family protein
    Computational Description
    CCCH-type zinc finger family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 10885 Blast hits to 7444 proteins in 511 species: Archae - 23; Bacteria - 415; Metazoa - 5228; Fungi - 922; Plants - 581; Viruses - 184; Other Eukaryotes - 3532 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR