K22423

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22423

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22423

Determination of introduced cDNA(s)

  • J033051I09 - Rice Full-length cDNAs - Original: J033051I09

    full reading [+] show sequence

    Nucleotide sequence: J033051I09 - full reading 
    GTCCTCGGTT CCTCCCCTCT TCTGGTCGCC CCCACCCACT CACAGGCTCA 
    ACTCAACTCC ACCCGAATCC GCAAGAGAGA GAGAGAGAGA CGATGGCGGC 
    GGCGGCGGGA GGAGGGACGA GGGAGGAGAT GGTGTACATG GCGAAGCTGG 
    CGGAGCAGGC GGAGAGGTAC GAGGAGATGG TGGAGTTCAT GGAGAAGGTG 
    GTGACGGCGG CGGCGGCGGG CGGGGGTGGG GAGCTCACGG TGGAGGAGAG 
    GAACCTGCTG TCCGTGGCGT ACAAGAACGT CATCGGCGCG CGCAGGGCGT 
    CGTGGCGCAT CGTGTCCTCC ATCGAGCAGA AGGAGGAAGG CCGCGGCGCC 
    GCGGGCCACG CCGCCGCCGC GCGCTCCTAC CGCGCCCGCG TCGAGGCCGA 
    GCTCTCCAAC ATCTGCGCGG GGATACTCCG CCTCCTCGAC GAGCGCCTCG 
    TCCCCGCCGC CGCCGCCGTC GACGCCAAGG TCTTCTACCT CAAGATGGAG 
    GGCGACTACC ACCGCTACCT CGCCGAGTTC AAGACCGGAG CCGAGCGCAA 
    GGACGCCGCC GACGCCACCC TCGCCGCCTA CCAGGCCGCG CAGGACATAG 
    CCATGAAGGA GCTGTCGCCG ACGCACCCCA TCAGACTGGG CCTTGCGCTC 
    AACTTCTCCG TGTTCTACTA CGAGATCCTC AACTCGCCCG ACCGCGCGTG 
    CACGCTCGCC AAGCAGGCCT TCGATGAAGC TATTTCGGAA CTGGATACCC 
    TTGGGGAAGA ATCCTACAAG GACAGCACCC TGATCATGCA GCTTCTTCGC 
    GACAATCTCA CTTTGTGGAC TTCTGATATG CAGGACGATG GAGGTGATGA 
    AATGAGGGAT GCAACCAAGC CTGAGGATGA GCACTAGCTA AAGATCCTAG 
    TGACAGTCGT CTGTCTCTTA ACCGCTGGGG GTAGTTATGA TGCTTGTACA 
    AGGACCATTT TCTTGTGTCC TTTCGTCGGG TCTTTGCTTA CCCTTTGTTT 
    ACTTATATTG CTATCGCCAT CCTCATGTAT TATTTGTTAC TTTCCTGCTG 
    GAATCCTGCT CGTGTGTGGG AGAGTGCCTC AAGCCTTTAA CTAGGACAAG 
    GATTGTCAAC TCTTGTTTAC TATGATTGAA TGGCTATGCT TGTTCGATAT 
    TT

    Gene models with high sequence identity

    1. AT1G78300.1 [+] show detail - general regulatory factor 2
      E-value: 6e-89; Score: 324.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily 14-3-3 protein 2.2e-99
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    FPrintScan 14-3-3 protein 1.9e-85
    FPrintScan 14-3-3 protein 1.9e-85
    FPrintScan 14-3-3 protein 1.9e-85
    FPrintScan 14-3-3 protein 1.9e-85
    FPrintScan 14-3-3 protein 1.9e-85
    FPrintScan 14-3-3 protein 1.9e-85
    Coil coiled-coil 0
    Gene3D 14-3-3 protein 4.3e-103
    HMMPanther 14-3-3 protein 9.7e-190
    HMMPIR 14-3-3 protein 1.1e-167
    HMMSmart 14-3-3 protein 1.3e-185
    HMMPfam 14-3-3 protein 1.6e-110

    See the detailed result >

    AT1G78300.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 2
    Curator Summary
    G-box binding factor GF14 omega encoding a 14-3-3 protein
    Computational Description
    general regulatory factor 2 (GRF2); FUNCTIONS IN: protein phosphorylated amino acid binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: GF14 protein phi chain (TAIR:AT1G35160.1); Has 2698 Blast hits to 2688 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1259; Fungi - 318; Plants - 766; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR