K22424

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22424

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22424

Determination of introduced cDNA(s)

  • J013095P11 - Rice Full-length cDNAs - Original: J013095P11

    full reading [+] show sequence

    Nucleotide sequence: J013095P11 - full reading 
    GATTGCTGAT TTCAGTATAA TTCGTCAGCA GCAGAACTGG TCATCTATAT 
    AAGTACATAA GCAAAAACGA TCATTCGACC CCACACGCTT CCTGATCGCT 
    TCTGGCAATG GGGCATCCTG TCGTCGCCGT CGCCATCGTC TTCGTCTCCG 
    CCGCCATCGC CATGGCGGCG AGCTCCCAGT ACTCCCACCA CCCGCTCGAC 
    CCGCTCACCG CCACGGAGAT CACCGCCATC CGCGCCGCCG TGCTCGCCTC 
    CCCGCTCGTG CCGGCCCGCC CGCTTTTCTT CCACTACGTC GGCCTCGACG 
    AGCCTGACAA GCCGGACGTC CTCTCCTACG CCTATGGCGC CGCCGACGCC 
    GCTGCCACCT CCTCCCAAAT GACCCTGCCG CGCCGCGCGT TCGTCATCGC 
    GCGGGCCGGC GGCCAGTCGC ACGAGTTCAC CGTCGACATC GCCGCCGACA 
    ACGCGTCCGT GCTCTCGCAC GCCGTCCACC GCGGGCCCGG CTTCCCGATG 
    TTCACGGACG AGGACCAGAT CGCGGCCATG GCGCTGCCGT ACACGTACCC 
    ACCGTTCGTG GAGTCCGTCC GGCGGCGCGG GCTGGACGTC GGCGAGGTCG 
    GCTGCGGGGT GCTCTCGAGG GGGTGGTTCG GCGCCGAGCA GCCGGCGTAC 
    GGCGGCGCCA GGGTGGCGAA GATGAAGTGC GTGGTGGTGG ACTACAACGC 
    CACGGCGAAC ATCTACGCGC GGCCGGTGGA AGGCGTGGTG ATGGTGGTGG 
    ACCTCGACCG GATGGCCATC ATCGGGTACA GGGACAGGGC GGTGTTCACG 
    GTGCCCAAGG CGGAAGGGAC GGACTACCGG GCGGACAAGG TCGGGCCGCC 
    GTTCACGGGA CCGGCGGCGC CGCCCGGCGT GGTGATGCAG CCGGAGGGCA 
    GGGGGTTCCA CGTCCACGGC CATCTTGTCA AATGGGCCAA CTGGGAGTTC 
    CATGTGGGTT TTGACATGCG CGCTGGCACG GTCATCTCTC TGGCCTCGGT 
    GAACGACACC GATGCCGGTG GGCTGAAGCG GCGGGTGCTC TACCGCGGCT 
    TCGTTTCGGA GATCTTCGTA CCGTACATGG ATCCGGAGGA GGAGTGGTAC 
    TTCCACACGT TCACGGACGC CGGCGAGTAC GGCCTCGGAG CCTTGGCGTC 
    GCAGCTTCAG CGTGGTGCCG ACTGCCCAGC CAACGCTGTC TACATGGATG 
    GCTACTACGC CGGCTCCGAC GGCAAGCCCG TGAAAGCCGA GGACGTGATC 
    TGTCTGTTCG AGCGATACGC TGGTGATGTC GCATGGCGCC ACACCAATGG 
    CATTGGGCTG GGCGGATTGT TCTCGGAGGT CCGGCCGGAC GTGACCTTGG 
    TGGTGAGGAT GGTGGTGACG GTTGGGAACT ATGACTACAC ATTGGACTGG 
    GAGTTTAAGA CCGTTGGCTC CATTAAGATT GTGGTGTCTC TTAGCGGTAT 
    CCTGGAGATG AAGGCCATAA ACTACACGCA CGTCGACCAA ATCAGGGAAG 
    ACACACATGG CACGCTGATC ACCGAGAACA CCATCGGTGT CTACCATGAC 
    CACTTTGTTA CCTACCACCT CGACCTCGAC ATTGATGGCA CCCGGAACTC 
    TTTCATCAAA AACAACATCG TTCCTAAGTG CAACACTGGC GTTCGTGCAA 
    CCGGCGGTGC TCCCACACCG AGGAGGAGCT ACTGGACAGT ACTATATGAG 
    GTTACCGAGA CTGAGGCGGA AGGCCAGGTG AACATTAATA GCGCTCCTGC 
    TGACCTCCTC TTCGTCAACC CGAGCAAGAA GATGAAGATT GGCAATGAGG 
    TAGGTTACCG GCTCATTCCA ACTGGTGCGA CAGCAACGTC ATTGTTGGCC 
    GACGATGACT ACCCGGAGCG CCGTGCAAGC TACACCAAGA AGCAGGTCTG 
    GGTTACGCCG TATAACAAGT CGGAGAAGTG GGCATCCGGA TTATACGCCG 
    AGCAAAGCAC GGGAGATGAC AACTTGGCCG CCTGGAGCAA GAGGAACAGA 
    AGTATAAAGG ATGAAGACAT TGTACTGTGG TATACGGTTG GTCTGCACCA 
    TGTTCCGTAC CAGGAGGACT TCCCAGTGAT GCCAACTATC AGCGGTGCAT 
    TAGAGGTCCG TCCATCCAAC TTCTTCGAGA GGAACCCGCT TATCAGAACA 
    AAGCCACCCG AAAACTCCCC AAACTGCTCG TGCAGCATTG GAGGATCTGC 
    TTAATGTGAT TGATGCTGCC GTGCATCTTA TTTATATTTA AGACATCTTG 
    TGCGTCTATG ATTCGATATA GCGGACCATT GGGGAGACAT TGTTCGCCTT 
    TTGTCCAATA ATTTTTATTT GATTTGATC

    Gene models with high sequence identity

    1. AT1G31710.1 [+] show detail - Copper amine oxidase family protein
      E-value: 1e-177; Score: 620.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Copper amine oxidase, N2/N3-terminal 1.6e-25
    Gene3D Copper amine oxidase, N2/N3-terminal 3e-26
    Gene3D Copper amine oxidase, C-terminal 2.7e-133
    superfamily Copper amine oxidase, C-terminal 9.3e-144
    superfamily Copper amine oxidase, N-terminal 7.2e-33
    superfamily Copper amine oxidase, N-terminal 1e-20
    HMMPfam Copper amine oxidase, C-terminal 4.8e-148
    HMMPfam Copper amine oxidase, N2-terminal 5.6e-18
    HMMPfam Copper amine oxidase, N3-terminal 5.3e-16
    PatternScan Copper amine oxidase 0
    PatternScan Copper amine oxidase 0
    HMMPanther COPPER AMINE OXIDASE 3.6e-234
    HMMPanther Copper amine oxidase 3.6e-234

    See the detailed result >

    AT1G31710.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31690.1); Has 1551 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 247; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR