K22431

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22431

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22431

Determination of introduced cDNA(s)

  • J023022A01 - Rice Full-length cDNAs - Original: J023022A01

    full reading [+] show sequence

    Nucleotide sequence: J023022A01 - full reading
    GACTCACCAG CGAGTACAAG CTACTCCTTC CTGCAAAGGA GATCATCAAT 
    GGCGCTTACT TTTACGCGCC ATAGCTTGGT CGTCATTGTG GGCGCGCTTC
    TTCTCCAGCT CTTCTTCCTC GCCGGCTTGG CCCCGGCGGC GGCGGCTGCG
    GGGCCGACGG GGCAGGTGAC GGTGTTCTGG GGCCGGAACA AGGACGAGGG
    GTCTCTCCGG GAGGCGTGCG ACACCGGCTT GTACACCATG GTCGTCATGT
    CCTTCCTCAA CGTCTACGGC GCCCGCGGCG GCGAGTACCG CCTCGACCTC
    GCCGGACACC CGGTGGGCTG CATCGGCGGC GACGTCAAGC ACTGCCAGCG
    CAAGGGCGTC CTCGTCTCCC TCGCCATCGG CGGCGGCGCC TACTCGCTCC
    CGACCAACCA GTCGGCGCTC GATCTCTTCG AACACCTCTG GAACACCTAC
    CTCGGCGGCG GCGGCGGCAA GGGCGCCGTG GCGGCGGCGC GGCCGTTCGG
    CGACGCCGTG CTCGACGGCG TCGACTTCTT CCTCGACCGC GCCACGCCGG
    CGGAGCGCTA CGACGTGCTC GCCACGGAGC TCGCCAAGCG CGGCAAGCCG
    CCGCGCCGCG CGCTGCACCT GACGGCCACG ACGCGGTGCG CGTTCCCGGA
    CCGCGGCGCC GCGCGGGCGC TCGCCACGGG CGCCTTCGAG CGCGTCCACG
    TGCGGTTCTA CGGCGGCGGC GGCGGCGGCG ACGACAACTG CACCGTGTAC
    TGGGAGGACG CGTGGGACAG GTGGACGGCG GCGTACCCGC GCAGCCGGAT
    CTACTTCGGC CTGCCGGCGG CGCCGGCGGT GGCGGAGGAG GAGCAGGACG
    GCCGGAGCGG GTACGTCTAC CCCAAGACGC TCTACTACCG CTACGTGCCG
    GAGTTGCAGA AGGCGGCCAA CTACGGCGGC TTCATGATCT GGGATCGCTA
    CAGCGACAAG CAGAGCGGGT ACAGTGGCTA CGTCAAGAAC TGGGCTTGAG
    CCTGTACGTT CGTTGCATTG CGTTCACCTT AGCAAAATAT TTCATTTCAT
    CACTTTATGA TGTACTAGTA CTTCAATTTG ATCTATGCAA CGCGTATATA
    GCAGATGTAA GTGAAAGAAC AAGTCGATCG AGAGATCAAT CTCCGTGCAA
    GAATACAACA GTTCG

    Gene models with high sequence identity

    1. AT5G24090.1 [+] show detail - chitinase A
      E-value: 3e-41; Score: 166.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.8e-80
    superfamily Glycoside hydrolase, catalytic core 2.8e-66
    HMMPfam Glycoside hydrolase, family 18, catalytic domain 1.7e-05

    See the detailed result >

    AT5G24090.1

    Model type
    Protein coding
    Short Description
    chitinase A
    Curator Summary
    Chitinase A (class III) expressed exclusively under environmental stress conditions.
    Computational Description
    chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR