K22431

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) dark green (PATO:0001249) (Cauline leaf::Color::dark) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	increased width (PATO:0000600) (Rosette leaf::Shape::wide) dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22431

Determination of introduced cDNA(s)

J023022A01 - Rice Full-length cDNAs - Original: J023022A01

full reading [+] show sequence

GACTCACCAG CGAGTACAAG CTACTCCTTC CTGCAAAGGA GATCATCAAT 
GGCGCTTACT TTTACGCGCC ATAGCTTGGT CGTCATTGTG GGCGCGCTTC 
TTCTCCAGCT CTTCTTCCTC GCCGGCTTGG CCCCGGCGGC GGCGGCTGCG 
GGGCCGACGG GGCAGGTGAC GGTGTTCTGG GGCCGGAACA AGGACGAGGG 
GTCTCTCCGG GAGGCGTGCG ACACCGGCTT GTACACCATG GTCGTCATGT 
CCTTCCTCAA CGTCTACGGC GCCCGCGGCG GCGAGTACCG CCTCGACCTC 
GCCGGACACC CGGTGGGCTG CATCGGCGGC GACGTCAAGC ACTGCCAGCG 
CAAGGGCGTC CTCGTCTCCC TCGCCATCGG CGGCGGCGCC TACTCGCTCC 
CGACCAACCA GTCGGCGCTC GATCTCTTCG AACACCTCTG GAACACCTAC 
CTCGGCGGCG GCGGCGGCAA GGGCGCCGTG GCGGCGGCGC GGCCGTTCGG 
CGACGCCGTG CTCGACGGCG TCGACTTCTT CCTCGACCGC GCCACGCCGG 
CGGAGCGCTA CGACGTGCTC GCCACGGAGC TCGCCAAGCG CGGCAAGCCG 
CCGCGCCGCG CGCTGCACCT GACGGCCACG ACGCGGTGCG CGTTCCCGGA 
CCGCGGCGCC GCGCGGGCGC TCGCCACGGG CGCCTTCGAG CGCGTCCACG 
TGCGGTTCTA CGGCGGCGGC GGCGGCGGCG ACGACAACTG CACCGTGTAC 
TGGGAGGACG CGTGGGACAG GTGGACGGCG GCGTACCCGC GCAGCCGGAT 
CTACTTCGGC CTGCCGGCGG CGCCGGCGGT GGCGGAGGAG GAGCAGGACG 
GCCGGAGCGG GTACGTCTAC CCCAAGACGC TCTACTACCG CTACGTGCCG 
GAGTTGCAGA AGGCGGCCAA CTACGGCGGC TTCATGATCT GGGATCGCTA 
CAGCGACAAG CAGAGCGGGT ACAGTGGCTA CGTCAAGAAC TGGGCTTGAG 
CCTGTACGTT CGTTGCATTG CGTTCACCTT AGCAAAATAT TTCATTTCAT 
CACTTTATGA TGTACTAGTA CTTCAATTTG ATCTATGCAA CGCGTATATA 
GCAGATGTAA GTGAAAGAAC AAGTCGATCG AGAGATCAAT CTCCGTGCAA 
GAATACAACA GTTCG

Gene models with high sequence identity

AT5G24090.1 [+] show detail - chitinase A
E-value: 3e-41; Score: 166.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Glycoside hydrolase, subgroup, catalytic core	1.8e-80
superfamily	Glycoside hydrolase, catalytic core	2.8e-66
HMMPfam	Glycoside hydrolase, family 18, catalytic domain	1.7e-05

See the detailed result >

AT5G24090.1

Model type: Protein coding
Short Description: chitinase A
Curator Summary: Chitinase A (class III) expressed exclusively under environmental stress conditions.
Computational Description: chitinase A (CHIA); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to salt stress, response to cold, cellular response to water deprivation, response to wounding, response to light intensity; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, chitinase active site (InterPro:IPR001579), Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR