K22443

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22443

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22443

Determination of introduced cDNA(s)

  • J033004P03 - Rice Full-length cDNAs - Original: J033004P03

    full reading [+] show sequence

    Nucleotide sequence: J033004P03 - full reading
    GACTCTCCTC GCGTTTCGGC TGGCCCACGA CACCGCCGAC GCGCGACGAA 
    CGCCGCCGCG CCGCCGCCCC CAAACCCCCA AACTGCTCCG GCGATCGTCG
    AACTGGCCAC GCCGCCCACG CCAGTTCGCG CTCACCTGCC CAGATAGTAA
    ACTATTTGGG TTGGGAATTT GATTCATATG GTGGCAGCAT TGGGTTATTT
    GTATATGATA CCAAGCCCAT TCAATTGAAA TGCTCCGCCT TATGGTTAAG
    GAGACTATAT GATGTTGAGT CCTTATAAGT TTATTGGACT TCAAGGAAGT
    GTTACCAGCT GTCATGAGGG TCAATCCTGC GCTCTTCCTG CCTTTGATGG
    CCGAATATGC AGCACCCACA TGGGCCATAC TAATTTCAGG GTTCTTCATG
    CTGCTTTCTG TTTCCCTCTC TATGTACTTG ATATTCCAGC ACCTTTCAGC
    ATACAACAAT CCAGAGGAAC AGAAATTTGT TCTCGGTGTT ATCTTGATGG
    TCCCTTGCTA TGCAGTTGAG TCGTATGTTT CATTGGTAAA TCCTGACACT
    AGCGTGTACT GTGGCATCCT GCGTGACGCC TATGAAGCAT TTGCTATGTA
    TTGCTTTGGA AGATATATTA CTGCTTGTTT AGGTGGTGAA GAAAGGACAA
    TTGCATTTTT GAAGAGGGAG GGTGGCGGAG ATTCTGGGGA ACCTCTTTTG
    CATGGTGCTT CTGAAAAAGG GATCATACAC CATCACTTCC CTGTGAATTA
    CATATTGAAA CCATGGAGAA TGGGTGTGAG GTTTTACCAG ATTATCAAAT
    TTGGTATATT TCAATATGTG ATTATAAAGA CCCTCACAGC TAGCCTATGC
    CTGATTCTTC AACCTTTTGG TGCATATTGT GATGGAGAAT TCAATTTGAG
    ATGCGGATAC CCATACTTTG CCGCTGTCCT TAACTTCAGT CAATATTGGG
    CCCTATACTG TTTGGTGGAG TGGTACACGG CTACTAAGGA CGAATTGGCA
    CATATAAAGC CATTGGCAAA ATTTCTTTCG TTCAAATCTA TAGTATTTTT
    AACTTGGTGG CAGGGTATTA TGATTGCTAT CATGTATTCT TTGGGCTTGG
    TTAGAAGTCC GTTGGCACAG AGCTTGGAGT TAAAGTCAAG CATTCAAGAT
    TTCATCATTT GTATAGAGAT GGGTATTGCT TCAGTTGTTC ACCTATATGT
    GTTCCCTGCA AAGCCCTATT CGCTATTAGG TAATCATCGT TCACCTGAAA
    ACATTTCAGT GCTAGGGGAC TATGCCGCCA CTGACCCTGT GGACCCTGAT
    GAGATAAAAG ATATTAGTCG GCCTACCAAA TTGAGGCTTC CACAGTTGGA
    ACCAGATGAG ATAATTGTGA CAAATGTTAA AGAGAGTGTT CGAGACTTTG
    TAATTGGCAG TGGAGAATAT GTGATAAAAG ATCTCAAATT CACGATGAAG
    CAAGCAGTGC GACCAGTCGG GAAGCGCTTT GAGAAATTAA TGAAGAAGAA
    GGGCAAGTTC GGGCAAAGCC GTGATGACAA TTGGGTAAGT ACCTCCACGC
    TACAGAGAGC AATCCATGGG ATCGATGATC CTCTCATATG CGGGAGCTCT
    AGTGACAGTG GGATCGGTAG AGGAAAACGG CACCGCAGGG ACGTAAGCTC
    AGCTGGTGTT GTGGACAGTT GGGAAGGCAG CGACCAGACA TCAGATGGGT
    ATGTCATACG GGGACGCCGC TGGGAAATCA AGAAATCATG ATATTCTTTT
    GTACAGGAGC TACGGAATAC AAGCTGGGTT GCTGACTCGC TGGTAAATTT
    TGGTGCTAGC GTACAGCTCC CGTAGATTGC TTAGCTACTT GTGTGATTGA
    TTGTTTGATA CTGTACATGG TTTCTCGTTT TCTATCTATA GGTGCGGTCA
    GAGTATTGTA AGTGCAGAAT TCCACAAATT GTGCCATGCT TCAAGGGGCC
    AAGTGTAATT GAGTTCCTTT ACAGAAGTGC AAGGTATTGT ACCAGAACAC
    AAGTG

    Gene models with high sequence identity

    1. AT4G38360.2 [+] show detail - Protein of unknown function (DUF300)
      E-value: 3e-163; Score: 572.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF300 2.9e-102
    HMMPanther ORGANIC SOLUTE TRANSPORTER-RELATED 9e-146
    HMMPanther Protein of unknown function DUF300 9e-146

    See the detailed result >

    AT4G38360.2

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF300)
    Computational Description
    Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT1G77220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR