K22444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22444

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K22444

Determination of introduced cDNA(s)

  • J013136J16 - Rice Full-length cDNAs - Original: J013136J16

    full reading [+] show sequence

    Nucleotide sequence: J013136J16 - full reading 
    GATCTTCGAA ATGCGGCCCA TGACGAGCCC ACCTCTCCTC TCGCCCTCCT 
    CCTCCTCCTC CCGTCTCCTC CTCCTCCGCC TCCTCCTCTC CCGCCGCCGG 
    AGCCCCGCCT CGCGCTCCCC TCCTCCTCCC CTCCGCCGCC GCCTCCCTCT 
    CCTCGCTGCC TCCATGTCCT CCTCCTCCTC CACCGCCGCC ACCAGAAACC 
    CCGGCTCCGT CGTCGCCGAC GCCGACGGCC TCGCCCGCAA GGTCGCCGCC 
    ATCCGCGCCG CCGGCCCCGC TAAGCTCCAG GTCATCGCGG ACTTCGACGG 
    CACGCTCACG CGGTACTGGT ACGACGGCTC CCGCGGCCAG AGCAGCCATG 
    GGTTGCTGAG GCAGGGGAAC GAGGAGTACG ACGCCAAGAG GGAGGAGCTG 
    TTCGAGCACT ACCACCCCAT CGAGATCTGC CCCGACATCC CGCTCCCCGA 
    GAAGGCCAAG CTCATGGAAG AATGGTGGGA GAAGACACAT GCTCTCCTTA 
    TCGAAGGTGG ACTTACATAT GAAGCTATAA GGCAATCTGT GGCTGATGCT 
    AAAATCACTT TTAGAGATGG AGTGGTGAAG CTCTTTGAGT TCTTGGAGGA 
    GAGAGATATT CCAGTATTAG TATTTTCTGC TGGACTTGCA GACATAATTG 
    AGGAGGTCTT CCGGCAGAAA CTCCACAGAT CATTCAAGAA CATTAAGGTT 
    GTGTCCAACA GGATGGTCTT CAATGAAGAA GGTCGTCTTG TTTCATTTAA 
    AGGAAAGACT ATTCATGTTC TAAACAAAAA TGAGCATGCC TTGGACATGG 
    CAGCTCCAGT GCATGACAAT TTGGGTGATC CAAATGGATA TACTGATGAC 
    TATTCGTTGG TGAAGAAGAG GACCAATGTG CTTCTCCTTG GAGATCACAT 
    TGGCGACCTT GGAATGTCTG ATGGTCTAAA CTATGAAAAC AGGATTGCTG 
    TTGGATTTCT GAACAACAAC ATCGAGAAAT CTCTAAAAGA TTACTCCGAG 
    GCATTTGATA TTGTCTACTT GAATGACGCG CCAATGGTGG GAGTTGTTGA 
    GCTTGTATCT GAACTATGTC CTTAACCAAA TGATGTTTTG CTGAGCTTAG 
    AAGCCGCATC CGCCTCCCGC TCTTGCTGAA ATCTGGGAAT CCTATTCCCC 
    ACTTCACTAA CCGGCTGGGT TTGTTCAATA AGAAGCAATT TTGTACAGGC 
    TTGACATCAA GCAAGCCAAG CAGCCTTTTG AACCAATATC TCCTTAAGCC 
    AATCCAAACT TGTATGAAGT CCAGAACACA TTTGTGAAAT GGAATTTCAA 
    ATTTGGTTTT GGTCCCC

    Gene models with high sequence identity

    1. AT2G38680.1 [+] show detail - 5'-nucleotidases;magnesium ion binding
      E-value: 1e-110; Score: 396.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UMPH-1 1.1e-90
    HMMPanther HAD-superfamily hydrolase, subfamily IE 1e-68
    superfamily HAD-like 8.5e-12

    See the detailed result >

    AT2G38680.1

    Model type
    Protein coding
    Short Description
    5'-nucleotidases;magnesium ion binding
    Computational Description
    5'-nucleotidases;magnesium ion binding; FUNCTIONS IN: magnesium ion binding, 5'-nucleotidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IE (InterPro:IPR006434); Has 332 Blast hits to 332 proteins in 84 species: Archae - 4; Bacteria - 0; Metazoa - 264; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR