K22448

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22448

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22448

Determination of introduced cDNA(s)

  • J013002N03 - Rice Full-length cDNAs - Original: J013002N03

    full reading [+] show sequence

    Nucleotide sequence: J013002N03 - full reading 
    GGCAGCGATC TGAAGTGAAA CAGCAAAAAA AATCAAACAA AAAGAAAAAA 
    TATTCCCCAT CTGTGAAATT CGCAAAACCC TAGCGCGGCG GCGATGTCGA 
    ACACGAGGGT GTTCTTCGAC ATGACCGTCG GCGGAGCTCC GGCGGGGCGG 
    ATCGTGATGG AGCTGTACGC GAAGGACGTG CCGCGGACGG CGGAGAACTT 
    CCGCGCGCTC TGCACCGGCG AGAAGGGCGT GGGCAAGAGC GGCAAGCCGC 
    TGCACTACAA GGGGAGCACC TTCCACCGCG TGATCCCGGA GTTCATGTGC 
    CAGGGCGGCG ACTTCACCCG CGGCAACGGC ACGGGAGGGG AGTCGATCTA 
    CGGCGAGAAG TTCGCCGACG AGGTGTTCAA GTTCAAGCAC GACAGCCCCG 
    GCATCCTGTC CATGGCGAAC GCCGGGCCCA ACACTAACGG GTCCCAGTTC 
    TTCATCTGCA CCGTGCCCTG CAGCTGGCTG GACGGGAAGC ACGTCGTGTT 
    CGGCCGCGTC GTCGAGGGCA TGGACGTCGT CAAGGCCATC GAGAAGGTGG 
    GATCCCGCGG CGGGAGCACC GCCAAGCCGG TCGTCATCGC CGACTGCGGC 
    CAGCTCTCCT AGATCTGTGC TGTTCCCCTT CGCCTTTCGC CAGTATCAGT 
    CGTCTTGAGT CGTCGAGTCC CTAAATAAGG AGGAGGTGGT GGTGGTGTTA 
    GTCTTTTTAT GAGTTCGTGT CGTGTTGGTG AGATGAGATC GCCCATGGTT 
    TGGTTGGATT AGGCGGAGTT CTTGGATCGA TTCGGTGGAG TTGGATCTGC 
    GATCCTTCTT GGGGTTGGTT TTAAATCTTA ATTCGTGTCG CTGCTTCTAT 
    GATATCGCTA TCAATCAATG AGAACATTTG GGATC

    Gene models with high sequence identity

    1. AT2G21130.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 1e-69; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.5e-69
    HMMPanther CYCLOPHILIN 6e-122
    superfamily Cyclophilin-like 1.7e-76
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.7e-48
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 46.206

    See the detailed result >

    AT2G21130.1

    Model type
    Protein coding
    Short Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR