K22501

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22501

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22501

Determination of introduced cDNA(s)

  • J033090D14 - Rice Full-length cDNAs - Original: J033090D14

    full reading [+] show sequence

    Nucleotide sequence: J033090D14 - full reading
    GGATCCGCCC CTCTTCTAGA CGACATATTT GCATTTGACC CCCCGTCCTC 
    TTCGATCTCC AAGGGAGTAA CCGAGGAAGG GATCCCGCGA AGCAGTAGCA
    TAGCAGCGGA AGAACTCAAG CGGAGTGGGC GAAGAAGCAA AGCCCGATGG
    ATCAACACCA GGTGGTCGGC GAGAATTATG CAAATCCAAA GACATGTTTC
    TTCCATGTCC TCTTCAAGGC AGGGGCATTG GCGTTCTACA TACTGTCTGC
    GCTGTTCGTG ACCAACTTTG TTATTATCTT TGTCATCACC GTGCTCCTGG
    CAGCACTTGA CTTCTGGGTG GTCAAGAACG TCAGTGGGAG GATATTGGTT
    GGGCTGCGCT GGTGGAATGA GATCGATGAT GAGGGCAATA GCGTGTGGAA
    GTTTGAGTGC CTTGATGGAG AGTCTCTTGC TAGGATGAAC AAGAAGGACT
    CATGGCTGTT CTGGTGGACT CTGTACTTGA CTGCTGCTGC ATGGATTGTT
    CTTGGGATAT TCTCACTCAT CAGACTTCAT GCTGATTACC TTCTTGTTGT
    TGGAGTTTGC TTGAGTCTCA GCATAGCAAA CATTGTTGGC TTCACCAAGT
    GCAACAAAGA TGCCAAGAAA AACGTTGCAG ATTGGACTAG AACTACGCTC
    CTATCATCTG GTGTCAGGTC AACAATTCAG TCAGCATTCG GTGTCTAAAT
    AGAGGCGCCC TAATGTCACA TACAGTGGTG TGCAATTTAT GAATCAGATG
    ATGCATTCTG CTTTTGTTTA CTTTGCCTAG TTGCTTATTG ACCCTATACA
    TCTTTGTGTC CCCTGATATC CTTGGTATTG TTTGATTCAC TGTGACAAAA
    GATTGAGGGT CAAGATAGGC ACACTACTCA ACCTACAAGT TCTTGATGTT
    CTTTGTATTT TTTAGCCTTG TCACTGGTGA CACTGTATAG CAGCTGAACT
    GGAAAACGTT CTACTTGGGA TAGATTGTAG TGTACAGCTA ACATCTTGAA
    ACATTATCAT AGTACTGCAT GGAGTTTGTC TTGTCGAACT TTTAACCATG
    AGGCAAAAGC AATGGATGTT GATGTTGTGA AGGAGC

    Gene models with high sequence identity

    1. AT1G09330.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 2e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF846, eukaryotic 1.3e-47
    HMMPanther Protein of unknown function DUF846, eukaryotic 5.3e-54

    See the detailed result >

    AT1G09330.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR