K22501

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22501

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22501

Determination of introduced cDNA(s)

  • J033090D14 - Rice Full-length cDNAs - Original: J033090D14

    full reading [+] show sequence

    Nucleotide sequence: J033090D14 - full reading 
    GGATCCGCCC CTCTTCTAGA CGACATATTT GCATTTGACC CCCCGTCCTC 
    TTCGATCTCC AAGGGAGTAA CCGAGGAAGG GATCCCGCGA AGCAGTAGCA 
    TAGCAGCGGA AGAACTCAAG CGGAGTGGGC GAAGAAGCAA AGCCCGATGG 
    ATCAACACCA GGTGGTCGGC GAGAATTATG CAAATCCAAA GACATGTTTC 
    TTCCATGTCC TCTTCAAGGC AGGGGCATTG GCGTTCTACA TACTGTCTGC 
    GCTGTTCGTG ACCAACTTTG TTATTATCTT TGTCATCACC GTGCTCCTGG 
    CAGCACTTGA CTTCTGGGTG GTCAAGAACG TCAGTGGGAG GATATTGGTT 
    GGGCTGCGCT GGTGGAATGA GATCGATGAT GAGGGCAATA GCGTGTGGAA 
    GTTTGAGTGC CTTGATGGAG AGTCTCTTGC TAGGATGAAC AAGAAGGACT 
    CATGGCTGTT CTGGTGGACT CTGTACTTGA CTGCTGCTGC ATGGATTGTT 
    CTTGGGATAT TCTCACTCAT CAGACTTCAT GCTGATTACC TTCTTGTTGT 
    TGGAGTTTGC TTGAGTCTCA GCATAGCAAA CATTGTTGGC TTCACCAAGT 
    GCAACAAAGA TGCCAAGAAA AACGTTGCAG ATTGGACTAG AACTACGCTC 
    CTATCATCTG GTGTCAGGTC AACAATTCAG TCAGCATTCG GTGTCTAAAT 
    AGAGGCGCCC TAATGTCACA TACAGTGGTG TGCAATTTAT GAATCAGATG 
    ATGCATTCTG CTTTTGTTTA CTTTGCCTAG TTGCTTATTG ACCCTATACA 
    TCTTTGTGTC CCCTGATATC CTTGGTATTG TTTGATTCAC TGTGACAAAA 
    GATTGAGGGT CAAGATAGGC ACACTACTCA ACCTACAAGT TCTTGATGTT 
    CTTTGTATTT TTTAGCCTTG TCACTGGTGA CACTGTATAG CAGCTGAACT 
    GGAAAACGTT CTACTTGGGA TAGATTGTAG TGTACAGCTA ACATCTTGAA 
    ACATTATCAT AGTACTGCAT GGAGTTTGTC TTGTCGAACT TTTAACCATG 
    AGGCAAAAGC AATGGATGTT GATGTTGTGA AGGAGC

    Gene models with high sequence identity

    1. AT1G09330.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 2e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF846, eukaryotic 1.3e-47
    HMMPanther Protein of unknown function DUF846, eukaryotic 5.3e-54

    See the detailed result >

    AT1G09330.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR