K22508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22508

Determination of introduced cDNA(s)

  • J033080P19 - Rice Full-length cDNAs - Original: J033080P19

    full reading [+] show sequence

    Nucleotide sequence: J033080P19 - full reading 
    GTCGTGAAGC TGATGGAGGA GCAGCTGGAT TCATCGGAGA TGGACATGGA 
    CGAGCCCGGC GCCGCCGCCC AAGACCGCCA AGGCTTGCGC CGCCGCCAAG 
    AAGCCGAGAT CGGTGAGCTC CGACTTCGGC GAGGAGCTGG ACCTGGAGCA 
    GCTCGGTGCC AAGCAGCAGC AGCAGCAGCA GGAGAGGAAG CTGTCGAGGC 
    AGGACCGCGT CGAGCTGAGC CGCTCGTTCC AGCACGCGGT GAGCTCCCAC 
    GACTGGGATG GCGCGGAGGC GCTGGTGCGG AGGGCCGACG CGCAGGGGCT 
    CAACGACGTG CTCTGCGTCG CCGTCGACGC CATCTGGTTC CTCAGCGACA 
    AGGAGGAGCT CGCCGCCGTC GTGGCCCTGA TCCGGAGGAT CGTGTCGGAG 
    GGCGCCAACG ACTTCACCCG CGCCGCGCTC CGGACGTCGT TCCTCGCGTC 
    GTGCGTGTCG GCGTGCAGGG GGAGAACGAC CAGCCTCGCC GACGCTGTGA 
    GCTTCATGGG GCAAAAGTTG AACGAGCGCC TTCAAGAATC CCATGGCGAC 
    GAGGTATTGA AGGCAGAAGC AAGCGCAAAG GTGCACAAGT TCACAGAGTG 
    GGCTCTAAAG TGTATCGGGC TGCATTCGCG TGTGCGGGAG AACAAGGGCA 
    GAGGAAACCA TGGCACGATC ATTGAGGTCC AACTTCAGCT GTCTGCTTTC 
    AAGACATTTC TGGATCTTGC CGATAATGAT CTTACTGGGA AGGATTTCAC 
    GGAGGCCTTT GACGCGGCAT GTTTTCCTCT TACACTCTTC TCAAACACCT 
    TTGACCAAGG TTGGGCATCA GGTATCTCGG CAGCTGCAAT ACAAGGACTC 
    TTAGAGTTGT TAGTAGAGGG TGGTGCCGAT AATGTGAACC AGTGCTTTCT 
    TGAGGCTGCT CGCTATGGAA GCACTGAACT CGTGCGCATC TTACTTCAGA 
    TTGCTCGAAG GAATAGCTTG GACATCGATG TGGATCTAGC CCTTGGCTTT 
    GCTGCTCACT ATGGGAAACT GGATACCATG GGGTGCTTAG TTGAGGAGGG 
    TAATGCGGTT GCCTTTCTTG GCCCTTTAAT GCGGGCAGCT GAACGGGGAT 
    GCCTTCAAGT TGTTGAATGG TTCGTCAACC TTGGTTGTCG GGATATGGAG 
    CTTTGCTTAG CCCTTACTGC TGCAACCTCT AGTAGCCAGG TTGCAGTTGC 
    AGCCTATCTT CTCCCTCTAG TCCCAAAGCA TGTTCTTGCA CCCCTCAGCG 
    TCGAAATTCT CAAGGCTGCT GGTGAGAGGA GCACCGGTTC CCTGCATGGT 
    GTGGACTTCC TTCTCCGCTC AAACTTCCTC AATGACCCAG CTGCCACATA 
    TGCTGTAGCA GACAACATTG CAAAATCTGC CGATGAGGCA GTGGATGCAA 
    AGCTTAGATC TTTCATGCTC GAGCATTGGT CAGAGGCAGC TTTTTCTGAG 
    GGATTCGCGT CTGCGCAAGA GCACTTCGTT AACTTCATGA GGATAATGGA 
    AAAGGGTGAG TCGCCGATCT GCCTGAGGGA CCTCCCACTT GAGCTGGTGA 
    TTGCCATGGC CTACCTACCA CTGTACAGGG AGTGCGTGGA GTCAGGTGGG 
    CGGCTATTGC CGCAGAAGCT GAGAGGGCAG CTTGTTGAGG CGGCTGGTAG 
    ACTCGAGGGC CGGCAACTCG ACAGGGCTAG CCAAGGCACA GAGCTCCTGG 
    CCATCTTGGA GCACCACCTC CCGTGTTTCA TGATCCAGAC TTGAAAGGTC 
    AGCTTCCACA TGATCTGCAT TGGTCGCTGC AAGAAGCAAA GTAACAAGGG 
    CAATGCACCA TCTTCAGTGT TTTCCAGTGC TGTCATGTTC CTGCTTGGGG 
    ACAATCATCT GAAACGATGG CACCTTGAGG TCTCTGAGAG CATAGTGACT 
    GAAGAACTCT CCTGCTGGCG CTGTTCGGAG AGTATATAAT TTTGGGGAGA 
    AAATGGTGTG TACCTTCTTG TCGAGCCAAG TGTTGAGTAG ATCTTATTGG 
    GATCATAATC TTGATGAAAA TGATATAAGC ATTGAGCAAA GTGTTCTCCA 
    GTTTTTTCTG AGTGCTAGCC ATGGGCGTCA TGTTTTTGTT TTGGACTAAT 
    GAGTTTTTGA ACATGGACTA GTCTCATC

    Gene models with high sequence identity

    1. AT2G44090.2 [+] show detail - Ankyrin repeat family protein
      E-value: 0; Score: 670.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ankyrin repeat-containing domain 5.9e-12
    Gene3D Ankyrin repeat-containing domain 3.99999861686544e-07
    HMMSmart Ankyrin repeat 179.999951654677
    HMMSmart Ankyrin repeat 280.000043118234

    See the detailed result >

    AT2G44090.2

    Model type
    Protein coding
    Short Description
    Ankyrin repeat family protein
    Computational Description
    Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G59910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR