K22512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22512

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22512

Determination of introduced cDNA(s)

  • J033079B04 - Rice Full-length cDNAs - Original: J033079B04

    full reading [+] show sequence

    Nucleotide sequence: J033079B04 - full reading 
    AGCTTCGACG CCGAGCACAC CGACACGGCG CTCGAGCGCT ACGTCCCCTT 
    CGTCATGGCC ACGGCGGAGC AGCTCCAGCG GCGGGAGCGC GTGCTCAGGA 
    TCTTCATGAA CGAGGTGCGC TCGTGGCACG GCTTCAACCA CCACCACCCG 
    GCGACGTTCG ACACGATCGC CATGGAACCC GACCTCAAGA AGTCCATCGT 
    CGACGACCTC GACCGCTTCC TGAAGCGGAA GGAGTACTAC CGCCGCATCG 
    GCAAGGCGTG GAAACGCGGG TACCTCCTCC ACGGCCCGCC CGGCACCGGC 
    AAGTCCAGCC TCGTCGCCGC CATGGCCAAC TACCTCCGCT TCAACCTCTA 
    CGACCTCGAC CTCTCCGAGG TGCGCGTCAA CGCCGCGCTG CAGCGCCTGC 
    TCATCAGCAT GCCCAACAAA TCCATCCTCG TCATCGAGGA CATCGACTGC 
    TGCTTCGACG CCAACCCAAG AGAAGCCCAC AAGATCACCA CGGCGGCGCT 
    CGACCAGGCC GAGGACTTCG ACTTCTCCTC GTCGGACTCC GACGACGCCG 
    TCGGCGCGCC GCCCAGAGCG CGCCGCGCGG GAGATCTCCA GCAGCAGAAG 
    CTGACGCTGT CCGGGCTGCT CAACTTCATC GACGGGCTGT GGTCCACGAG 
    CGGCGAGGAG CGCGTCATCG TCTTCACCAC AAACTACAAG GAGCGCCTCG 
    ATCCGGCGCT GCTCCGGCCG GGGCGGATGG ACATGCACGT CTACATGGGC 
    TACTGCGGCT GGGAGGCGTT CAAGACGCTC GCGCACAACT ACTTCCTCGT 
    CGGCGACCAC CCGCTGTTCC CGGAGATACG GCAGCTGCTC GCCGGCGTGG 
    AGGTGACGCC GGCCGAGGTG TCGGAGATGC TGCTGCGCAG CGAGGACGCC 
    GACGCCGCGC TCCGGGGCCT CGTGGAGTTC CTCCGTGAGA GGACGCGGCG 
    GAGGGCAAGA CAAGAGGCAG CGATCGACGA CAACCAAGTG GTAGCAGAAA 
    AAGGCAATGC AGCTTAACAA ATCTTCAGAG AATTTACTTC ACAATAACGA 
    GATGAGATGA TTGGGTTGCA TGATCACGAC AGTAGCAAAC TTGGTACTAG 
    TAGTACTTAC TGAATTAATA ATCATTTGTC ATGCTCACTA TAATTTCTGT 
    TGCAAATCTG CAAGCAATGG CATAGCTAGG CAAGGCAACA GAGAACAGAA 
    GAGAGTGCAG AGCGTCTGGT CATGGATTAA CTGTTGCTTT CTGAAAAGCT 
    GGGCTTATCT TAAAACAAAT GATGAGCTGT GGTTTTAGTT TCAACCCCAG 
    CCTAACTTAA CAGAGTAGCA TATAAACATA TGACAGGAAA CTACTCCGCG 
    TTGGAGGGGT AAGAAATGGG ACTCTGCATT TTCTGAATAA TGAGACACTT 
    TCTGAATC

    Gene models with high sequence identity

    1. AT3G50940.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 3e-84; Score: 309.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23070:SF1 0
    Gene3D G3DSA:3.40.50.300 1.9000069431527e-35
    HMMSmart ATPase, AAA+ type, core 2.2999993566538e-10
    PatternScan ATPase, AAA-type, conserved site 0
    HMMPfam ATPase, AAA-type, core 1e-06
    HMMPfam ATPase, AAA-type, core 0.017
    HMMPanther PTHR23070 0
    superfamily SSF52540 6.20001486442682e-42

    See the detailed result >

    AT3G50940.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cytochrome BC1 synthesis (TAIR:AT3G50930.1); Has 22184 Blast hits to 20506 proteins in 2862 species: Archae - 1312; Bacteria - 7436; Metazoa - 3634; Fungi - 2857; Plants - 2601; Viruses - 34; Other Eukaryotes - 4310 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR