K22531

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22531

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22531

Determination of introduced cDNA(s)

  • J013001D20 - Rice Full-length cDNAs - Original: J013001D20

    full reading [+] show sequence

    Nucleotide sequence: J013001D20 - full reading 
    GGGCTTCGGC TTCTCTCTCT CTCTCTCTCT CTCTCCTCGA AAACCCCAAC 
    ACACACAACG CGAACCCCAC TCCGCGATGG CGTCCGCCGG CGATCGCCGC 
    GGCGGCGGGG GGCCTCCCGG CTCCGGCGAC GACTCCGGGG GTGGTTGGGA 
    GACTGTTGAG AAGAGGGTAA AGAAACCAGC GCAACAAGTT GGGAAGGGGC 
    AATGGGGACA ATGGAATTCT CCAAATGCTG CACCTGCACC TACTGCACCA 
    CGGAGTGGCT CTGGAGCTTT TCATCATTCT GGAAACACTT TGGTTCGACA 
    TTCTGATCGT AGGCCAGCAA GAGGCACTCC TAGGCCACCA CCACAAAACA 
    GGTCTATAGA GGCAGAACTG CAAGCACCGC ACGGAGTTGT GACTGCACCT 
    CTGGCAAATG GTTGGCAGTG GGGAGCCAGG TCTTGCCCAC CTGGTACTGA 
    AAGCAAGGAG GGTGGTCTTC CTTTGTCTGG TTGTGATCCT GAAACAGACA 
    ATGCTGAAGG TTATGACACA TCGGACGATG ATAATGATGA TGATATGAGT 
    GACGATTTGA GTGATGACTA TGATTCTGAT GCAAGTGAGA AAAGTTTTGA 
    GACTCGGAAA AATCACAAGT TGTTCAAAGG TTTCTTCGAA GTCCTGGAGG 
    CGTTAAGTGT AGAACAGTTA AATGAACCAA CTAGGCAATG GCATTGCCCA 
    GCATGCAAAA ATGGACCTGG TGCAATTGAC TGGTACAAAG GGCTACAACC 
    TTTGATGACT CATGCCAAAA CAAAGGGTTC TATAAAGGTC AAGCGTCACA 
    GAGAATTGGC TAGTTTATTG GAAGAAGAGC TATCTCGCAG GGGAACTTCA 
    GTGGTACCAT CTGGCGAACA ATTTAGGAAA TGGAAAGGAT TGCGGGAAAG 
    CACTGATCGT GAGATTGTTT GGCCACCAAT GGTGGTTGTT ATGAACACTG 
    TATTGGAACA AGATGAGGAT GATAAGTGGA AAGGTATGGG GAACCAAGAG 
    CTAATTGATT ATTTCAGTGA ATATGCTGCA AGCAAAGCAC GCCATGCCTA 
    TGGTCCAAAT GGGCACCGTG GCATGAGTGT GCTAATCTTT GACAGCTCGG 
    CTGTGGGCTA TATGGAAGCA GAACGTTTGC ATGATCACTT TGTTCGTCAA 
    AGAACAGACA GGAATACATG GAACAGTGCT CACCAAGGTT ACATTCTTAC 
    CTGGTGGGAA AAGGCAGCTG TATGGTTTCT TAGCTACAAA AGATGACATG 
    GAGACATTCA ATAGACATTG CCACGGAAAA TCCCGTTTGA AATATGAGAT 
    GAGATCTTAT AATGAGATGG TGGTTACCCA AATGAAGCAG ATGAGCGAAG 
    ACAACCAGCA ACTGAATTAC CTGAAGAACA AAATGGTTAA GAAAGAGCAG 
    CACTCTAAAT TAGTAGAGGA TACATTGAGT GTTGTTACCC AGAAACTTAG 
    GGAGACAATG GAAGAGAATA CTATTGTACG AAATAAAGCC AAAGAAAAGC 
    ACTTGGAGTA TGAGAAAGAG ATGAAGTACC AGGAGGAATT TTTCCATGAT 
    CAAATCGAAA AAAATTCACA AGGCCACAGA GGAGAAAGAA ATCAAGTTTG 
    AGAAGTTGCT GCAAGAGGAG CGAGCAAAGG CTAGACAAAG TGATGTTGAC 
    TCTGGAAGTA CTGAAGATCG CAGGCAAAGG AAGGAAAAGA TTCAGAACTT 
    CATAGACTGC CAGGTGAAGG ATGTTGAGGA ATTTGAAGCC GAACGAGACA 
    AACTGATCAA ATTGCATGAA GAGAAGAAGG TGAAGCTCAA GAAGGAGTAC 
    CTGGCGAAGG AATTTGAGCT TGAGAAGGAG CTGGACACAG CCCTCACTTC 
    CCTGATGGAT AAACACAAGC CGGACATCTT CAAATCCTCC ACCTCGCCTT 
    CGACATGAAG AACTGCGGCT TACCATACAT TTCCTGCTCA TCTACAATAG 
    CTAAGACTCC CATTTCCTAA GTACCCGTAA AACTTCTAGC GATGCGAAAG 
    CATCATTCTG TTTGGGTGGA TGCATGCCTT TGGAAGGAAA CCTGAACCAG 
    TTCCGTATTA TATGGAGTAC TATCAGTTTA TGGTTGCTGA TGAACTGATG 
    ACTGTGCGCT GCGCTTTTAC AGCAAGCGTG GAAATCGAAT ATATATCTAG 
    TTTATCTCAT CATTCTGCTC TGCGTTGCAT C

    Gene models with high sequence identity

    1. AT5G23570.1 [+] show detail - XS domain-containing protein / XS zinc finger domain-containing protein-related
      E-value: 5e-119; Score: 72.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Domain of unknown function XS 7.3e-17
    HMMPfam Domain of unknown function, putative Zinc finger, XS/XH 0.000000000014
    Coil coiled-coil 0
    HMMPanther TRANSCRIPTION FACTOR X1-LIKE 2.6e-79
    HMMPanther RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED 2.6e-79
    HMMPanther TRANSCRIPTION FACTOR X1-LIKE 0.00000000000094
    HMMPanther RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED 0.00000000000094
    HMMPanther TRANSCRIPTION FACTOR X1-LIKE 9.8e-40
    HMMPanther RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED 9.8e-40

    See the detailed result >

    AT5G23570.1

    Model type
    Protein coding
    Short Description
    XS domain-containing protein / XS zinc finger domain-containing protein-related
    Curator Summary
    Required for posttranscriptional gene silencing and natural virus resistance.SGS3 is a member of an 'unknown' protein family. Members of this family have predicted coiled coiled domains suggesting oligomerization and a potential zinc finger domain. Involved in the production of trans-acting siRNAs, through direct or indirect stabilization of cleavage fragments of the primary ta-siRNA transcript. Acts before RDR6 in this pathway.
    Computational Description
    SUPPRESSOR OF GENE SILENCING 3 (SGS3); CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR