K22534

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22534

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22534

Determination of introduced cDNA(s)

  • J023060M04 - Rice Full-length cDNAs - Original: J023060M04

    full reading [+] show sequence

    Nucleotide sequence: J023060M04 - full reading 
    GATTTTCTCA GGTGGTTTTC TGGTTCAGTG GAGAAAAAAA AAGGTTAGAA 
    TTAGACTTCT TTGGAAGGTT CTAGAGGTTT CTAGATACCG CCGTCCCGGG 
    GGGTGATGGC GATCCCCAGA AGGTCGGCGG CCGCCGTCGC TGCCGTGGTG 
    GCGCTCGCGT CCGTGGCCGC TGTCGCCGGC GAGGTCTTCT TCCAGGAGAA 
    GTTCGACGAT GGATGGGAGG ATCGGTGGGT CAAATCTGAG TGGAAGAAGG 
    ATGACAACAG GGCCGGCGAA TGGAACCACA CCTCCGGCAA GTGGTACGGC 
    GACGCCGACG ACAAGGGTAT CCAGACGTCA GAGGACTACA GATTCTACGC 
    CATTTCGGCC AAGTACCCTG AGTTCAGCAG CAAGGACAAG ACCCTCGTGC 
    TGCAGTTCTC GGTGAAGCAC GAGCAGAAGC TCGACTGCGG CGGCGGCTAC 
    GTGAAATTGC TCGGTGGCGA CGTTGACCAG AAGAAGTTTG GTGGCGAGAC 
    GCCGTACAGC ATCATGTTTG GACCAGATAT CTGCGGGTAT GCCACCAAGA 
    AGGTTCACGC TATCCTTACA AAGAACGGCA AGAACCATCT AATCAAGAAG 
    GACGTGCCAT GCAAGACCGA TCAACTGACG CACGTCTACA CCTTGATCAT 
    CCGTCCTGAC GCCAAATACA GCATTCTGAT CGATAACACT GAGAAGCAAA 
    CTGGAAGCAT CTATGATGAT TGGAACATTA TTCCTCCAAA GAATAAGAGG 
    GATCCTGAAG CCAAGAAGCC AGAAGACTGG GACGACAATG AATACATTCC 
    TGATCCTGAG GACAAGAAGC CTGAGGGCTA TGATGATATC CCTAAGGAAA 
    TTACTGACCC AGAAGCAACT AAGCCTGAGG ACTGGGATGA TGAGGAAGAT 
    GGAGAATGGA CAGCTCCAAC CATTCCAAAC CCTGAGTACA AGGGACCATG 
    GAACCAAAAG AAACTTAAGA ACCCTAATTA CAAGGGCAAA TGGAAGGCAC 
    CATTGATCCC CAACCCAGAT TACAAGGATG ATCCTTACAT CTACGCTTTT 
    GATAGTTTGA ACCACATTGG CATTGAGCTG TGGCAGGTTA AGTCGGGAAC 
    TTTGTTTGAC AACATTCTTA TCACTGATGA CCCTGAGTAT GCCAAGAAAT 
    TTGCAGAAGA AACCTGGGCC AAGCATAAAG ATGCTGAGAA AGCCGCCTTT 
    GATGAAGCTG AGAAGAAGAG GCTTGAGGAG GAATCTGCAA ACTCTAAAAT 
    CGACGACAGC GACGACGACG CTAGTGATGA TGAGGATGAG GCGGACGATG 
    ACAAGGCTGA TGTCGTTGCT GAGCAGACCA AGGACAAGGG TGATGAGAAA 
    CCGCAGGACA TCAAGGTCTC TGCTGATGAG AAGCCAAAGA GCAGCAAGGA 
    TGATTCTTCC GCTGCGAAGA AGGACGAGCT TTAGATATTT TATTATTATT 
    AGATGATAAT ATGTCATGAC GAAGAGGCAA CTGAATCAGG TGTTGGTGCT 
    AAATATTTCC TAAGCAGGGG ATCAGAGAAG AGGAGCAGAG AAGCTTGTGC 
    TAGTTTTAAC TGGTTTCTTT ACTTGCTTGC TTGAGGGCTG AACAGTACAC 
    TTGCTTGTAC GTTGGGCAGC ACACCATCAT CAGTCTATAC ACATGCACTG 
    GCTTTCTATT TATAGGCTTG ATAAACCGAT ATGTAAGAAG CTTCAGGACC 
    TAGCTAGAGA CTTGTAGTAC TACTACATTG TCAAACTTCA CTGGTACTAG 
    TACTACTGTA AAATCACATC ATGCATGTCT

    Gene models with high sequence identity

    1. AT1G09210.1 [+] show detail - calreticulin 1b
      E-value: 1e-159; Score: 560.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Calreticulin/calnexin 1.3e-115
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 5.6e-66
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 5.7e-17
    HMMPanther Calreticulin 1.4e-217
    HMMPanther Calreticulin/calnexin 1.4e-217
    superfamily Concanavalin A-like lectin/glucanase 1.6e-84
    superfamily Calreticulin/calnexin, P 2.1e-37
    superfamily Concanavalin A-like lectin/glucanase 2.3e-05
    PatternScan Calreticulin/calnexin, conserved site 0
    PatternScan Calreticulin/calnexin, conserved site 0
    PatternScan Calreticulin/calnexin, conserved site 0
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54

    See the detailed result >

    AT1G09210.1

    Model type
    Protein coding
    Short Description
    calreticulin 1b
    Curator Summary
    Encodes one of three Arabidopsis calreticulins.
    Computational Description
    calreticulin 1b (CRT1b); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.1); Has 5507 Blast hits to 3456 proteins in 438 species: Archae - 6; Bacteria - 291; Metazoa - 2217; Fungi - 528; Plants - 416; Viruses - 176; Other Eukaryotes - 1873 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR