K22534

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22534

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22534

Determination of introduced cDNA(s)

  • J023060M04 - Rice Full-length cDNAs - Original: J023060M04

    full reading [+] show sequence

    Nucleotide sequence: J023060M04 - full reading
    GATTTTCTCA GGTGGTTTTC TGGTTCAGTG GAGAAAAAAA AAGGTTAGAA 
    TTAGACTTCT TTGGAAGGTT CTAGAGGTTT CTAGATACCG CCGTCCCGGG
    GGGTGATGGC GATCCCCAGA AGGTCGGCGG CCGCCGTCGC TGCCGTGGTG
    GCGCTCGCGT CCGTGGCCGC TGTCGCCGGC GAGGTCTTCT TCCAGGAGAA
    GTTCGACGAT GGATGGGAGG ATCGGTGGGT CAAATCTGAG TGGAAGAAGG
    ATGACAACAG GGCCGGCGAA TGGAACCACA CCTCCGGCAA GTGGTACGGC
    GACGCCGACG ACAAGGGTAT CCAGACGTCA GAGGACTACA GATTCTACGC
    CATTTCGGCC AAGTACCCTG AGTTCAGCAG CAAGGACAAG ACCCTCGTGC
    TGCAGTTCTC GGTGAAGCAC GAGCAGAAGC TCGACTGCGG CGGCGGCTAC
    GTGAAATTGC TCGGTGGCGA CGTTGACCAG AAGAAGTTTG GTGGCGAGAC
    GCCGTACAGC ATCATGTTTG GACCAGATAT CTGCGGGTAT GCCACCAAGA
    AGGTTCACGC TATCCTTACA AAGAACGGCA AGAACCATCT AATCAAGAAG
    GACGTGCCAT GCAAGACCGA TCAACTGACG CACGTCTACA CCTTGATCAT
    CCGTCCTGAC GCCAAATACA GCATTCTGAT CGATAACACT GAGAAGCAAA
    CTGGAAGCAT CTATGATGAT TGGAACATTA TTCCTCCAAA GAATAAGAGG
    GATCCTGAAG CCAAGAAGCC AGAAGACTGG GACGACAATG AATACATTCC
    TGATCCTGAG GACAAGAAGC CTGAGGGCTA TGATGATATC CCTAAGGAAA
    TTACTGACCC AGAAGCAACT AAGCCTGAGG ACTGGGATGA TGAGGAAGAT
    GGAGAATGGA CAGCTCCAAC CATTCCAAAC CCTGAGTACA AGGGACCATG
    GAACCAAAAG AAACTTAAGA ACCCTAATTA CAAGGGCAAA TGGAAGGCAC
    CATTGATCCC CAACCCAGAT TACAAGGATG ATCCTTACAT CTACGCTTTT
    GATAGTTTGA ACCACATTGG CATTGAGCTG TGGCAGGTTA AGTCGGGAAC
    TTTGTTTGAC AACATTCTTA TCACTGATGA CCCTGAGTAT GCCAAGAAAT
    TTGCAGAAGA AACCTGGGCC AAGCATAAAG ATGCTGAGAA AGCCGCCTTT
    GATGAAGCTG AGAAGAAGAG GCTTGAGGAG GAATCTGCAA ACTCTAAAAT
    CGACGACAGC GACGACGACG CTAGTGATGA TGAGGATGAG GCGGACGATG
    ACAAGGCTGA TGTCGTTGCT GAGCAGACCA AGGACAAGGG TGATGAGAAA
    CCGCAGGACA TCAAGGTCTC TGCTGATGAG AAGCCAAAGA GCAGCAAGGA
    TGATTCTTCC GCTGCGAAGA AGGACGAGCT TTAGATATTT TATTATTATT
    AGATGATAAT ATGTCATGAC GAAGAGGCAA CTGAATCAGG TGTTGGTGCT
    AAATATTTCC TAAGCAGGGG ATCAGAGAAG AGGAGCAGAG AAGCTTGTGC
    TAGTTTTAAC TGGTTTCTTT ACTTGCTTGC TTGAGGGCTG AACAGTACAC
    TTGCTTGTAC GTTGGGCAGC ACACCATCAT CAGTCTATAC ACATGCACTG
    GCTTTCTATT TATAGGCTTG ATAAACCGAT ATGTAAGAAG CTTCAGGACC
    TAGCTAGAGA CTTGTAGTAC TACTACATTG TCAAACTTCA CTGGTACTAG
    TACTACTGTA AAATCACATC ATGCATGTCT

    Gene models with high sequence identity

    1. AT1G09210.1 [+] show detail - calreticulin 1b
      E-value: 1e-159; Score: 560.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Calreticulin/calnexin 1.3e-115
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 5.6e-66
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 5.7e-17
    HMMPanther Calreticulin 1.4e-217
    HMMPanther Calreticulin/calnexin 1.4e-217
    superfamily Concanavalin A-like lectin/glucanase 1.6e-84
    superfamily Calreticulin/calnexin, P 2.1e-37
    superfamily Concanavalin A-like lectin/glucanase 0.000023
    PatternScan Calreticulin/calnexin, conserved site 0
    PatternScan Calreticulin/calnexin, conserved site 0
    PatternScan Calreticulin/calnexin, conserved site 0
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54
    FPrintScan Calreticulin/calnexin 4.1e-54

    See the detailed result >

    AT1G09210.1

    Model type
    Protein coding
    Short Description
    calreticulin 1b
    Curator Summary
    Encodes one of three Arabidopsis calreticulins.
    Computational Description
    calreticulin 1b (CRT1b); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.1); Has 5507 Blast hits to 3456 proteins in 438 species: Archae - 6; Bacteria - 291; Metazoa - 2217; Fungi - 528; Plants - 416; Viruses - 176; Other Eukaryotes - 1873 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR