K22544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22544

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22544

Determination of introduced cDNA(s)

  • J033042J01 - Rice Full-length cDNAs - Original: J033042J01

    full reading [+] show sequence

    Nucleotide sequence: J033042J01 - full reading 
    GACTCCACCA CCACCACCCC CCATGGCGGC AGCAAGGATG AAGAACACCA 
    CCATGGGTTG CGCCTTCCTG CTCGCCGCGT TCGCCATGGC CGCCGCCTTC 
    GTCCCCGTGG CCGAGTCCAG GACCACCCCC GTGGAGAAGA CGACCACCAC 
    CCAAGCAGAG GATGGTGTCA AGAAGCCGGA CTGCGTGCCG GCGTTCGACC 
    CGCGCTCGTT CCCCGGCCAC GGCGGCACCA CGACTCCGAC GCCGATCCCG 
    GGCCACCACG GCGGCGGCGG CTCATCCGGG ACCACGCCGT CGCACGGCGG 
    CGGCCCCTCC GGGGGCGCGT TGCCTTCCCC GTCCCACGGC GGCGCGGCGC 
    CGTCCCACGG AGGAGGGTAC GGGGCTTCCC CGCCGGTGAC GCCCTCCCCT 
    GGCGGCGGCT ACGGCGGCGG CTCCCCGGCG CCGTCCCACG GTGGCGGCGC 
    CTACGGGAGC TCCCCTTCCA CGCCTTCTGG CGGCGGCTCC TCCCCGACGC 
    CGTCCCACGG TGGCGGCGCG TACGGCGGCG GCGGAGCTCC GGCGACACCG 
    GCGTCGCACG ACGGCCACGG CCTCATCCCC ACCACCCCCG GGACATGCGA 
    CTACTGGAGG TCGCATCCGA TGGAGATGTG GTCGGCGCTG GGGCGGTGGC 
    CGAGCTCGGT GGGCCACTTC TTCGGCTCCG GCTCCGGCGG CGCTGGAACG 
    GGGATGAGCA TCCAGGACGC GCTGGCCAAC ACCCGCGGCG ACGGCGCCGG 
    CGAGCTGATG CGGGAGGGCG CCGCCGCGCT GCTCAACTCG ATGACCCGCT 
    CCGGCTTCCC CTACACGGCC GAGCAGGTGA GGGACGCGTT CGCGGCGGCG 
    GCGGGGGGAG GCTCCGACGG CGCCGCCGCG GCGCAGGCGG CGGCGTTCAA 
    GAAGGCCAAC GAGGGCGGCC GCGCGTAGAC GACGACGACG ACGTACGCAA 
    CGTACGCATC CGTGCATGCA TGCATGGCTT AATTGTTTAA TTAGGCGGGA 
    AAATTAAAAA GTACGTGTGT TAAATTAGTT GTGTGGTTGA TTTGATGGTG 
    ATGGTCTGGT TGTGTACGTG TGGTTGGTGT GTTTATGCGT GTAAAATCAT 
    GTGTAATCAC TCTCGTGTTT AAGTTTTTTT TTTTTTGCTG TTTCAAATTC 
    GATCGGTGGC AAATGAAGGA AGTGAGCTTA TCCTT

    Gene models with high sequence identity

    1. AT2G42840.1 [+] show detail - protodermal factor 1
      E-value: 2e-11; Score: 67.40

     

    InterPro Scan Digest

    See the detailed result >

    AT2G42840.1

    Model type
    Protein coding
    Short Description
    protodermal factor 1
    Curator Summary
    Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia.
    Computational Description
    protodermal factor 1 (PDF1); Has 74620 Blast hits to 36810 proteins in 1713 species: Archae - 153; Bacteria - 12776; Metazoa - 27126; Fungi - 11565; Plants - 10582; Viruses - 2385; Other Eukaryotes - 10033 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR