K22609

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22609

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22609

Determination of introduced cDNA(s)

  • J013002J20 - Rice Full-length cDNAs - Original: J013002J20

    full reading [+] show sequence

    Nucleotide sequence: J013002J20 - full reading
    GAGTTTGCCA AAACCACCAA CCCGGAAGCA CAAAAACCGC CCTCTCCTCC 
    TCTCGTCGCC ACTGCTCCCC AATCCACCCG ACTCCGGCGA TCTCCCATGG
    CGGCAGCGGC GACGGCCACG AGGCGGCCGA GCGGGCACGT CCTCTCCGCC
    GCGCACTACC GCTCCGCCTC CCCGACGCGC GTCAAGCTCG CCGGCGGCGG
    AGCACGCGCG TCCGTCAGCG TCTCGTCCGT GAGCCGCCGC TCCTGCATGT
    GCTCGCCGAC CAACCACCCG GGGTCGTTCC GGTGCAGCCT CCACAAGGAG
    CAGAAGCGGA GCGTTCACCA CAAGGCGGCG GCGGCGCCAT CCTCCCCGCC
    GTCGCCGACC AGCCCGCCGG CCTCGGGCGG CGCCGTCAGG CTTGGCGGCG
    CGAGGCGGAT GGGCGGCAGC GCGCTGGTGC GGATCGGCGC CGTGGAGAGC
    GGCCAGTGGG CGCGGAGGGC TCTCGCCGCC ACCATCCGCC CCTCCCCCGC
    CGCGCAGCAG GCGCAGCACC GGAGACGCGT CGCCGGGCTC CGCCCCCGCC
    CCAGCCGCCT CTCCGCCGTC TCCATGGCCG GCGACCGCGC CGGCGACAAC
    CACCACCACC ACCGATAAAC CCCAATTCGC CGACATCTCA ACCAATTGAG
    ACACATACTA GTAGCATAGT AGTAGTACAT AGGAATTATT ACATATAGAA
    ATTTTTTTTT TCTGTAGTGT ATAGTGATGT GAGAAGTGAG ATTAAGCTGA
    ACATGGAGTT TTGGATCCGT GTGCTGCTTG TACATTCATT CTGAAATCTG
    CCCATGGTTT TGGATTAAAT CCATTAATCC TTATGCCTTT CATGATAAGA
    AGAGAAGAAA AAATTGGAGA TAGTACGTGT CTCCGGATTA CGCAC

    Gene models with high sequence identity

    1. AT5G11090.1 [+] show detail - serine-rich protein-related
      E-value: 1e-11; Score: 67.40

     

    InterPro Scan Digest

    See the detailed result >

    AT5G11090.1

    Model type
    Protein coding
    Short Description
    serine-rich protein-related
    Computational Description
    serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G25280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR