K22612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22612

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22612

Determination of introduced cDNA(s)

  • J033050N14 - Rice Full-length cDNAs - Original: J033050N14

    full reading [+] show sequence

    Nucleotide sequence: J033050N14 - full reading 
    GCCCGTCTCC TCGTCTCCTC GCGTGTTCGC CCGCCGCCCT GCGCCGACCA 
    GCGCAGCCGC AGCGGCGCCG GCGTCCTGCT GCTTCCGCCC GCATCCTCGC 
    CGGTAAGAGG CAGAATCACT TCGTTAGGCA AGGATGAGCA AAGGCCCAGC 
    TCCGTTCCTC AACATTGGGA AGAGAGCAAA AGATCTTTTG TACAAGGACT 
    ACAATTTTGA CCAAAAGTTT TCTTTAACGA CAACTAGCAA TTCTGGTTTG 
    GGTCTAACAG CCACCGGTGT GAAGATAGAC GAACTCTTCA TCGGTGACAT 
    ACAGACACAA CATAAAAGTG GCAAAACCAC TGTTGATGTC AAGATTGATA 
    GTGAATCTAG AGTGTCAACC ACAGTCACTG TTGATGAAGC CCTTACTGGT 
    CTGAAGACTT CTTTTAGCTT CAGGGTTCCT GATCAAAAGT CCGGGAAGCT 
    TGATTTGCAA TACCTTCATG ACCATTTTGC ACTGAATTCT ACCATTGGTT 
    TGACATCAAC GCCTTTAATT GAGCTGGCAG CAACTATCGG CACGAATGAA 
    CTTAGTGCTG GTGCTGAGGT TGGATTCGAC AGCACTTCAG CTTCTGTTAC 
    TAAGTACAAC TCAGGGATCT GCTATAACAA ACATGATTTT TCTGCTGCCG 
    TACTATTGGC TGATAAAGGG GAGACTTTAA AAGCTTCTTA TATCCACACG 
    TTCAATGAAA CCAATGGAGC TACAGTGGCG GCTGAAGTAA CGCACAAGTT 
    AAAAACAAAA GAGAACTATT TCACCATCGG GAGCTCTCAT GCTATTGATT 
    CTTCGACGTT GCTGAAGACA AGATTTAGCA ATGGTGGCAA AGTTGGAGTT 
    CTCTGTCAGC ATGAGTGGAG GCCCAAGTCT ACTGTAAGTA TTTCTGCCGA 
    GTATGATCCC AAAGTGGTGA GATCGCCTTC AAGATTCGGC GTGGCCATAG 
    CCTTGAAGCC TTGATTATCA CCTCCTGTAC AAGTGTTAGA TACTTCTTGC 
    CCGTGTGCAT CCTAGCCATA CTTACGAAAG CTCCACCATT TTATGCCCGT 
    TTTGTAAGTG TCTTGGCCGA AGAAACGTTG TTGTCTTGGA GTTGGTCTTA 
    GTTTTGTGGA ACCCTACCAC CAGCCGACTT CATCCCGAGA ATTGAAAATA 
    CAGAGAGTTT TGTACTGGAA ACAATAGATT TACTGTTTTG CTGCTTCAGA 
    AACTATTCGG TGTCGATTGT ACACCTTGAA GAGCCCCCCT TG

    Gene models with high sequence identity

    1. AT5G57490.1 [+] show detail - voltage dependent anion channel 4
      E-value: 2e-76; Score: 283.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1, 9.2e-129
    HMMPanther VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 9.2e-129
    HMMPfam Porin, eukaryotic type 2.6e-57

    See the detailed result >

    AT5G57490.1

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 4
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 4 (VDAC4); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 2 (TAIR:AT5G67500.1); Has 864 Blast hits to 864 proteins in 195 species: Archae - 0; Bacteria - 0; Metazoa - 407; Fungi - 143; Plants - 294; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR