K22617

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22617

Determination of introduced cDNA(s)

J013002C17 - Rice Full-length cDNAs - Original: J013002C17

full reading [+] show sequence

GTGAGGGAAA AAGAGAAGCA ACCAGACACT GCACACATCA TCATCTTCTC 
CCCCGAGACC GGGTGATCTT GGGTTAGCTT AGCTAGCTAA ATTAAGCTGC 
GTGCAGCATG GGGCTCCTCG ACCAGCTCTG GGACGACACG GTGGCCGGGC 
CGCGGCCGGA CTCCGGCCTC GGCAAGCTCC GCAAGTACGC CTCCTTCTCC 
CCTTCCTCCT CCTCCTCGAC GATGGCGGCG TCGCCGTCGC CCATCTCGGC 
GGCGGCGGCG GCGGCCGACG CGCCGGCCGT GACGCGCAGC ATCACCATCC 
TCCGCCCGCC GGCGCTGTCC GTGACGTCGC CGCGCGGCAG CGAGTCGGGC 
CCCTCCACGC CGTCGTCGCC GGCCAGCGTC CCGGACTCCC CCTTCGGCTC 
AGCACCGACG CCGAAGGGAT CGGAGGGCTG GAAGAAGCTG CGCCGTGGGG 
CGGCGAGGAT GGCCGACGGC GTGGACGCCA GCGCCGGCGG CCAGCCGAGA 
AGCCCCACCG TATACGACTG GGTGGTGATC AGCTCACTCG ACAGGTGAAG 
GCGTGATCTA TCTAATCGAG CAGCTAAGCT CTGCATCCGG CGAGAAACTG 
CACCTGCACA ATATGAAGCA GCTAGAAACT GAAGGCGAGC AAAGAAGAAA 
AAAAACACTA AATTCTGCTC TTTTTCAGTT AAGTTTCAGC TCGTCGATCC 
AGAGCATGAA ATGTTCAGTG TTCAGCTATC TGCACTACTA CAGACTGCCG 
ATTTTGTAGC CAAGGATGTA TAAACGTATG CATGCTTGTA CTACCACCGT 
ATAATATACG TACGTGTACG TAGTAGATCG ATGCAGACAA AAAGTCTTAG 
CAGAAGAGGG GATCCTTGTA CGTACACAAC CTGTAGTGTA CGTACACGAT 
GCGATCGATG ATGAACTGAT AGTATATGTA TATGGCGCAG CTGGTGTATT 
ATATTACATG CGCTAGCTGG AGGGAGAGTG TGCTAATGTT GTACTAGTAC 
TACGACTGAT CTGTTTGCTT CTCCTCTGCT TTCTTTGTCT CCAGAAAAGA 
GGGAGAGGAG AGAAGTTTTT CCCCTGTTTT TGTGGAATAT GTAAAAGATG 
GCTGCAGTGC ATGCAGCAGT GTAAAAGTGT GAAAAGAAGT GGGCAATAAT 
GCATGGCCAA ATAATGTTAT GAACCT

Gene models with high sequence identity

AT1G56220.4 [+] show detail - Dormancy/auxin associated family protein
E-value: 1e-07; Score: 54.70

InterPro Scan Digest

See the detailed result >

AT1G56220.4

Model type: Protein coding
Short Description: Dormancy/auxin associated family protein
Computational Description: Dormancy/auxin associated family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT1G54070.1); Has 192 Blast hits to 192 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR