K22620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22620

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22620

Determination of introduced cDNA(s)

  • J023020F07 - Rice Full-length cDNAs - Original: J023020F07

    full reading [+] show sequence

    Nucleotide sequence: J023020F07 - full reading 
    GATCCCTCCT CCCCTTCTCC GTCCAAACTA CCCGCCTCCG CTCCCAATCC 
    GGCGAGATCA CCAAACCCCT CTCGCCGCCT CCGCCGCCGC CGCCGCAGCA 
    GCAGCAGTCA CTCCGCCGGA GCACCATGAT GCACATGACC TTCTACTGGG 
    GGAAGGACGT GACGATCCTG TTTGACGGCT GGCGGACGGC CACGTGGACC 
    GGGTACCTCC TCTCCCTCGT CGCGCTCCTC CTCGCCTCCG CCTTCTACCA 
    GTACCTCGAG GCGTTCCGGA TCCGCGTCAA GCTCCTCGCG GGCGCCAAGC 
    CGGCCTCCAT CCCGCCCCCG GCGTCCTCCG ACGCCGCGCG GGCCCCGCTC 
    CTCCTCCCCT CGTCCGCCGC CGGACGCTGG CCGGCGCGGC TGGCGACGGC 
    CGGGCTGTTC GGGGTGAACT CCGGCCTGGG CTACCTCCTC ATGCTCGCCG 
    TCATGTCGTT CAACGGCGGG GTGTTCGTCG CCGTGGTCGT CGGGCTCGCG 
    GCGGGCTACT TGGCGTTCCG CAGCAGCGAC GGCGAGGACC TCGTCGTGGT 
    CGACAACCCC TGCGCCTGCG CCTAGGGTTT GGCTTTGCGG CTGCCCCCAG 
    GTGTGGCTCC TCTGTTTGGT TTCCCGATCT TGTATGACAA GTAGAAATAA 
    ATCTGTGTAC AAATTCAATT GCGTGACAGG GGGATTCCGG TGTTTCTGTA 
    ATTTGGGGGG AAATTGTAGA GTACAAAATG AGAAAGCTGC TACTTTTGTG 
    TTTCC

    Gene models with high sequence identity

    1. AT5G20650.1 [+] show detail - copper transporter 5
      E-value: 8e-19; Score: 90.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COPPER TRANSPORTER 8e-46
    HMMPanther Ctr copper transporter 8e-46
    HMMPfam Ctr copper transporter 1.9e-26

    See the detailed result >

    AT5G20650.1

    Model type
    Protein coding
    Short Description
    copper transporter 5
    Curator Summary
    encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast
    Computational Description
    copper transporter 5 (COPT5); FUNCTIONS IN: copper ion transmembrane transporter activity, high affinity copper ion transmembrane transporter activity; INVOLVED IN: copper ion transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ctr copper transporter (InterPro:IPR007274); BEST Arabidopsis thaliana protein match is: Ctr copper transporter family (TAIR:AT2G26975.1); Has 497 Blast hits to 497 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 217; Fungi - 69; Plants - 156; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR