K22621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22621

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K22621

Determination of introduced cDNA(s)

  • J013111B10 - Rice Full-length cDNAs - Original: J013111B10

    full reading [+] show sequence

    Nucleotide sequence: J013111B10 - full reading 
    GATTGAGTTC TTTGGACGTT TCCCCATCCA GAAAAAAAAA TCTTCTCAGT 
    TACAGGATCC ATCCTTAGGT GTTAGAGGCA AACCCCTCTT CTAATTCTCT 
    CAGAGTCCTC CATAGTTCTT TCTGCTCCTT TTTTCTCATG ACCACAATGC 
    TTGCAGCTAG CTCTGTAGTG AACAGCAACC TTCCTTGCTC ATCAAGGATA 
    TCCTCCTGCT CAGACTTCAC ATCTGGCTAC TCCTGGCGTC CTATAGAGGC 
    TGCAAAACTC TGCCGGACAC GAGCTGTGCG CTCGCTGCAG ATAACCTGTA 
    CTGCCACAAA GCCTGCAAAG TCACCAGCTG AAGAAGAATG GAAGATCAAG 
    AGGCAAGTGC TAGTAGAAAA GCGGGTCCGT AGTGTTGATG TGAAGGAAGC 
    ACTGCGTCTT CAGAAGGAAA ACAATTTTGC AATTCTTGAT GTCAGGCCAG 
    TAGCGGACTT TAAAGAGGCT CATCCACCTG GTGCCGTTAA TGTGCAAATA 
    TATAGATTGA TAAAGGAATG GACAGCATGG GATATTGCAA GACGGGCAGC 
    ATTTGCATTC TTTGGCATAT TTTCTGGAAC AGAAGAGAAT CCTGAGTTCA 
    TACAAAGTGT TGATGAGAAA CTTGGTAAAG ATGCAAAGAT TATTGTGGCA 
    TGTTCGACAG GAGGAACATT GAAACCAACA CAGAACTTTC CTGATGGGAA 
    GCAATCGAGG TCCCTGATAG CAGCTTACTT GTTGGTCCTG AATGGTTACA 
    AGAATGTGTT CCATCTGGAT GGAGGACTCT ACACATGGTT CAAGGAAGGC 
    CTACCGGCTG TTGAAGGAGA AGAATAAGCA ATTAGGACAT ATTACTTGTA 
    ATTAGTGCAT CAGTATTCAT GAACATGGAG GTGTGATGAG TTGTAACGAG 
    GCATCTTCTC GGATAAATAG TGCACTAGTT TGATCCTTTC TTCTTCCTTT 
    CCCAAAAGGA TATGCCTCCT TGGACCTCCT GCCTATATGA AGATGTGTTA 
    GATTTCTCAT GACCTGCTGC TGTCGACTTG TCGGTGTATG ATACTTGAGC 
    ATGCCCATTT GACAAAATAG ATAAGTATGT TAGAGC

    Gene models with high sequence identity

    1. AT4G27700.1 [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
      E-value: 5e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Rhodanese-like 1.1e-23
    HMMPfam Rhodanese-like 2.8e-14
    superfamily Rhodanese-like 8e-24
    ProfileScan Rhodanese-like 18.436
    Gene3D Rhodanese-like 9.1e-19

    See the detailed result >

    AT4G27700.1

    Model type
    Protein coding
    Short Description
    Rhodanese/Cell cycle control phosphatase superfamily protein
    Computational Description
    Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: aging; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G08920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013028D24 - Rice Full-length cDNAs - Original: J013028D24

    full reading [+] show sequence

    Nucleotide sequence: J013028D24 - full reading 
    TCCACGGCTG GCACAGCAGA GTGGATGGCA CCAGAAGTAC TTCGAAACGA 
    ACCATCTGAT GAGAAATGTG ATGTTTTCAG CTACGGGGTT ATATTATGGG 
    AACTTTTCAC ACTACTTCAG CCATGGGAAG GTATGAACCC CATGCAAGTT 
    GTTGGAGCTG TTGGTTTTCA GCAACGTCGC CTTGATATTC CAGCTCATGT 
    GGATCCCACC ATAGCAGAGA TAATAAGGAG ATGCTGGCAA ACAGACCCAA 
    AGATGCGTCC ATCATTTTCA GAGATCATGT CTTCCTTAAA ACCATTATTG 
    AAAAACACGC TTGCCAATCA ACCCCAAAGG CAGCGAGTGC AACGAGCAGA 
    TGGCTAAGAA AATGGAGGTC AACACCAGGC GACAACGTTA AAACAAGGTG 
    CCTTGGTCTT TCATGCCTTC CAGTAACTGC CCACCTGTAA CTATACCATT 
    ATTTTGTATA GCAACATCAA ATGCATGGCT AAGGTGAAAA AGGTGAAGTT 
    CTATTTTTGT CCACCCGTCC GAATACACTG TAAATTTTCC ACAGGCAAAG 
    AAATGCCGAG CTTAGAAAAG CAGCCAACCC ATCAAGCAAA AGAAAAGGTA 
    AAGGAGGGAA AAGGAAAATT TGTGCAAAAC TACTGTACAT TTTTTTTTCT 
    TCCTTGTCAT TTCTTTGGTT CCCAAAGGTT GAGTATTAAT GTGTAAGGCC 
    CAATCAATTG TATTGTTGTT CAACATAAAA GGTCAGTCAT CTTAATCAGC 
    AAGCTTGAAG AAGCCCTCTG GCAGGGCCCC TGTGTATATC ACATTCTGAC 
    AAATTCGTCG GAACTGACAA TTAGATTGCA GGAGAAAAAC CCCTTTTTGT 
    ACC

    Gene models with high sequence identity

    1. AT1G18160.1 [+] show detail - Protein kinase superfamily protein
      E-value: 2e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MAP3K DELTA-1 PROTEIN KINASE 1.4e-70
    HMMPanther SERINE-THREONINE PROTEIN KINASE 1.4e-70
    ProfileScan Protein kinase, catalytic domain 16.344
    superfamily Protein kinase-like domain 8.6e-27
    Gene3D no description 2.3e-25
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.4e-25

    See the detailed result >

    AT1G18160.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1); Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100; Bacteria - 12949; Metazoa - 47184; Fungi - 11113; Plants - 33371; Viruses - 486; Other Eukaryotes - 18556 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR