K22636

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22636

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22636

Determination of introduced cDNA(s)

  • J033100G21 - Rice Full-length cDNAs - Original: J033100G21

    full reading [+] show sequence

    Nucleotide sequence: J033100G21 - full reading
    GGCCATTTCC TCTCGCTTGC AATCTCACCA TTAACAGGCT GTACCAGGAA 
    GCATCCATTT CGATCGCAAG AAGAATAATG GGTGAGAGCA GAGGCAGCAT
    TGCCTTCTTC GCGAGCTACA GGCCACCGGT GGCTCTGGAC ATATTCTGCT
    GCCCAGCTCC ACCGTCTAGC CCGAAGGACG AGCTGCACCT GACGGACGGC
    GACTCCTACA ACTACAACTG CCAGCCCATC CCACCGGCGG CGCTCAAGAC
    GGTCGTGGAG CGCCTCGGCG TGTCCCGCGG CGACGCCGTC GAGGGCGACA
    TCGATTCCGG CCGCATCACC GGCCTCGTCT TCGTCTCCGA GAGGGAGCAC
    AACCTCGAGA CGCTCCACAT CGCCCTGCGC TTCAACGACG ACGGCGAGGT
    CCAGGTCTTC TCCCTGGCCG ACGCCTATGG CGGCGACGGC CTGTTCAGCG
    GCGCCCGCAT GGAGGACAGC GGCTGCATTG CCGGCGGCTA CGAGGTGGAT
    GGCCGCACGG TTGACCATTA CCTCGTGTAT GTGTCCACCA AGGAGCCAGT
    GCGAGAACGT CGCAGCCCGT GGAACGTCGC TTACAAGACC AATCTTAGAA
    CCGGCGAGAC TGAACGCCTC ACACCACCAG GAACATTTGA TATAAGCCCA
    TCTGTGTCAC CATCCGGGAA GAAAGTAGCG GTGGCTTCGT ACCAAGGGAA
    GAAATGGGAC GGTGAGATCA AGAACCTCAA CACCAACATC TACGTGATGA
    GCTTGGAGAA CCCGTCTCAG GATCGCGAGC GGGTGATCGA GAACGGCGGC
    TGGCCGTCGT GGGGCAGCGA GGACGTGATC TTCTTCCACA GGAAGGACGG
    CGACGGGGAG AACAGCTGCT GGGGCGTGTT CCGGCACACC CTGAGCACCG
    GCGAGACCGT CCGGGTGACG CCGGCGGCGT TCGACCCGGT GACTCCGGCG
    GCCATCGACG AGACCAGGGT GGCGGTGGCG GCCATCCGCC AGAAGTCCGA
    GTTCAGTGAT GTCCGCGTCG AGGCACAGTA CAGGCACATC GAGGTGTTCG
    ACATGAGATC GCCGGAGCAG CCGATGCAGA TCACCCGGAA CACCAGGCCA
    AAGGCCGACC ATTTCAACCC CTTCGTGATG GACGGTGGCA AGTTCATTGG
    TTACCACCGT TGCAAAAGCG AGCTCCTCCA GCACGGCGAT GATCTCCCGA
    GAAAATTTCA CAAGCTGCAA TCCCCACACG AAGATGTCGG TGTGTTCAGG
    GTGTCCGGTG TGTTCCCAAC ATTTTCCAAA GATGGTTCTC AGCTTGCCTT
    CGTTGACAAC GAGTTCAAAT CCGTGTGGCT GGCCGATAGC CAAGGGATGC
    GTGTCGTCTT CAAGACTGAT GGCCCAGACA GCGTCTTCTC ACCGCTGTGG
    AATTCCAAGA AGGATATACT CTATGTGTGC ATGGGACCTT CTTTCAAAGC
    CAGTGAAACG TTGGAGATCC ATTCCATACA CAATGTATCC ACTGGTGACC
    GGAAGTCGCG GCAGCTCACG TTCGGAGGAT TCAACAACGC CTTCCCTTCC
    ACCAATCCAG ACGGAACGAA ATTTGTTTTC CGGTCGACAA GAGATGGAGG
    GGCAAAGTAC AGCAAGAACC TGTACATAAT GGAGGACGCC GACGCCGGAG
    AAGGCGAGGA TGGCAGCCAG TCGACGGTGA CGCGGATGAC CGCCGGCGAG
    TGGACGGACA CGCACTGCCA GTGGTCTCCG AACGGGAAGT GGATCGTGTT
    CTCGTCGAAC CGGGACAGGC CGGCGGACGC GCCGGAGCGC GACCACGGCC
    TCGACCCGGG CTACTTCGCC GTCTACCTGA TGGACGTGGC GTCCCGGTCG
    GTGGTGAGGG TGATCAGGAG CGGGTACGAC GTCGCCGGGC ACGTGAACCA
    CCCGGTGTTC AGCCCGGACG GGCGGAGCAT CGCGGTGACG TCCGACCTCG
    CCGCGGTGAC CGCCGACCCG ATGTCGCTGC CGCTCTTCCT GCACTCCGTC
    AGGCCCTACG GCGACATCTT CACCGTGGAC ATCGACCCGG ACGACATGGC
    GAGGAACGAG GACGTGGAGG GGTTCGTCCG CGTCACGCAC AGCCGGTACG
    AGAACTCCAC GCCGGCGTGG ACCGTGTTCT CCACGCACGA CCCGCACGCG
    CAGTGGAACC TCCTCGTCGT GGAGGACGAG CACGTCCCGT CGTGCCCGTA
    CGCGCATCCG GACGGAGGCG AGAGTTGGCA CATGACCGGC CAGATTTGCA
    TCCCCAAAAG GCACTGTTAA TTCTCTCGCC ATTGCATTAC TACGTTTCTT
    GTTTAGAAGC GTTGTTGTTT GTTTAACGTA CGATATTTAT TATCTGAAGA
    CGTTTTCAGC ATTTGCTTGG ATGTACAACG TGTGTATGAA CTGTTTGCGA
    TGTAATATTT GTTTATTTGC TTGAGATGTA CTTTTTTCTT GTCAGTAAGA
    CTTTTGCATA AATCGAAAAA ATAATCACAC GAGTGTAATA CTACG

    Gene models with high sequence identity

    1. AT1G21680.1 [+] show detail - DPP6 N-terminal domain-like protein
      E-value: 5e-97; Score: 352.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TolB, C-terminal domain 4.5e-22
    superfamily Tricorn protease N-terminal domain 0.000000000069
    Gene3D Six-bladed beta-propeller, TolB-like 0.000000018
    Gene3D Six-bladed beta-propeller, TolB-like 2.4e-26
    HMMPfam WD40-like Beta Propeller 0.031
    HMMPfam WD40-like Beta Propeller 0.0012
    HMMPfam WD40-like Beta Propeller 0.0000041
    HMMPfam WD40-like Beta Propeller 0.034

    See the detailed result >

    AT1G21680.1

    Model type
    Protein coding
    Short Description
    DPP6 N-terminal domain-like protein
    Computational Description
    DPP6 N-terminal domain-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21670.1); Has 9463 Blast hits to 5353 proteins in 1263 species: Archae - 75; Bacteria - 6165; Metazoa - 47; Fungi - 60; Plants - 122; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR