K22642

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22642

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22642

Determination of introduced cDNA(s)

  • J013123L02 - Rice Full-length cDNAs - Original: J013123L02

    full reading [+] show sequence

    Nucleotide sequence: J013123L02 - full reading 
    GGGGGCGTAG AGCCAGCTAT CTATCAGCCA CCGCACAACC CACAACTGGC 
    CTTCAGAAAG GGAGGAAGAA GATGATGGAG GTGGAGAAGC CATGGGAGTT 
    GAAGGAGGAT GTGGAGATCA TGACGGAGGA GGAGGAAGAA GACGACAGCA 
    GCAACCTGCT GCAGGCCAGG GGCAGGAACA AGAAGCACGC GCTCATCAAT 
    GGAGATGAAC AACAACAACA ACAAGAAGAA GAAGAAGAAG AAGAGGTTGT 
    TGAGGAGCAC AAGAGCGTCT TCTTTGATCC AACCCAAGTT TCTGAGCATG 
    TTACTGAAGT AAGTGGTAAG AATGAAGTTA CAAGAGTGGA GCAGTTCGTT 
    GCTAAAAAGG AAAAGGCGCA TGAAACATCA AGTTCAAAGG GAAAAGAACT 
    TGAGACACAG GAAAATGCTA ATTCTCAAGA AACTAATGAA AATTCTAATA 
    ACAGCAGTTT GGAGAACAGA TCACCTTCAA ATGGTTCACA TGAAGTCTGT 
    AACAGTGGTG AAACAGTTAC AGTTGCAAAT GGAAAAGCAG GCTTGAAAGT 
    GATCACAATC ATTGACAAGA ACCAAAACGG CCTGGCAAAC TCAAATGGTT 
    CTCTTCACAT TGCCAATGTC AGCATGAACA AAACTAGTGT CCATGAAATT 
    GAAGCTGAGA AGGATGAAGA TGTCATTAAG GGCAAAGTGA ACATTGAAGA 
    GTATGACCTT GAGAAAATTC TTGATGAGCA AGAAACTCAT GACCTGTTCT 
    GTCCCAATTG CAACTCATGC ATAACTCAAA GGGTGATTCT GCGGAAGAGA 
    AAAAGGACAG TAAGACAAAC ATCACCTGAT GAACCACCAA AGAAAACACA 
    GATTGCAGAG CCTTCTGCTA ATACTTCAAA TCAGACTGTA CCTGAAAGAC 
    AAGGGCAAGA GTCACCTGAC ATATTCAGAT GTTTATCATG CTTCGCCTTC 
    TTCATTCCAA CAGGTTGTGG CTTTAACATA TTCCGTATAT TTGGAAGGAC 
    GGAAGTGAAC CAAGAAGCTC AGGTACAGGA AGCTGCTGCA TCAGGTCAGA 
    TGTCTGGCTC CGACAATTGT GCAAGTTGGC TTTTTTCTTG TTTCGAGCCT 
    GGAGACGGTC CAAAGAAAAC TGATGCAGGT CCAGAAAAGG AGCCACTATT 
    ACCTGACAAG CAGGACTCCA ATAATGGTTC AGCTTCATCA GTTGAAGGTA 
    GCACAGCATC CGTTCATAGT CATGGCATAA GTGTACAACA ACAAGAATCA 
    AAGAGACCAT TGCCAGCTGA GTCATCTTCC CAACTTCAAC CCAGCAATAC 
    AAAGAAAGAA GACTTCGGAA CAGTATCGTT CAGTGGATCA TCATCGGTAG 
    AAGCTCCTTC ATCGTCATCT GCTAGCATTA TCAACCCTGG ACAGACCGCG 
    ACAGGATTCC TTCAGACTGG GGAAACACAT GTGGTGATTG GGCAGCAGGA 
    CATCGTACTG CAACAGAACG TTCCTCTTCC AAAGCCTGGA GATGCAGCTC 
    ACCTAGATAA ACAGAAACAA GAAACTCCAC CAGCAAGCCA CACATTTCCT 
    ACACCGGGAG TCAAGATCCC AGATGCAAAT CCAGCTAAAT TTATACCAGA 
    TGTGGTGAGG CCAATGGTAG ATAAACCAAG TCGAGGCATT GTGATTCCTC 
    CTGAAGCAGT TGAGTCACAA ACTCGACCTG AGCATTCATC AGTGCAAATA 
    GGGCCTGATG CGAGCATGCC ATTGATTGAT ACTCCTGCAC CAGAGCAAAG 
    GGATGATTGG GACATCCTGA AAGCTATCGT ATACGGTGGC CTCGTGGAAT 
    CGATCACCAG CCTCTCTGTG GTTTCAGCAG CTGCATCCAG CGGCGCCAGG 
    ACATTGGACA TATTCATCTT GGGCATAGCA AACCTCATCG GTGGACTTCC 
    CATCATCTTT CACAGCATGG CTGAGCTGAG AAGCATTGGA GATGTGGATG 
    AGAGGGAGGA GCAGGGCGGT CACTACTGGT TGCAGCTGGG GAGGCGATCC 
    AAGTACCGGC TGCATGTCGC CATGGCCGTG CTGTCCTACC TCCTCTTCGG 
    CCTGCTGCCG CCGCTCATCT ACGGCCTCTC CTTCCGCGGC GGCGACGTGA 
    GGGAGAAGAA GATGGTGGCG GTGGCGGCGG CGTCGCTGGG GTGCATCGCG 
    CTGCTGGCCA TGGGCAAGGC ACACGTGGCA CGGAGGCGGA GCTACGTGAA 
    GAGCCTCCTC TACTACCTGA GCATTGGCGT GAGCGCGTCG GGCCTCTCGT 
    ACGTCGCCGG CCTCCTCGCC CACTTTGCCC TCATCACCCA CCAAACCCCT 
    CCTGCTTCAT CCTCCTGGGC TTCATACTGA ATTTCTTCTT CTTGTTTGGT 
    TCGACAAAAG TTTTGATGCC TTCCCATTTA CAGCAAGCCC TTCGCAAGAT 
    CATAGTGTAA AAGCTCTTTT TCGTTGTACC ATAGCACCCT TTTTTTTTGT 
    CAATAAACTT TGGCAAGGAA AATAACAAGG TCAGGCTTGC CCTGTTCTTT 
    TTACCG

    Gene models with high sequence identity

    1. AT4G27870.1 [+] show detail - Vacuolar iron transporter (VIT) family protein
      E-value: 5e-29; Score: 127.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Protein of unknown function DUF125, transmembrane 6.7e-11

    See the detailed result >

    AT4G27870.1

    Model type
    Protein coding
    Short Description
    Vacuolar iron transporter (VIT) family protein
    Computational Description
    Vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: vacuolar iron transporter (VIT) family protein (TAIR:AT4G27860.2); Has 285 Blast hits to 248 proteins in 70 species: Archae - 2; Bacteria - 30; Metazoa - 59; Fungi - 10; Plants - 112; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR