K22643

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22643

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22643

Determination of introduced cDNA(s)

  • J033088M01 - Rice Full-length cDNAs - Original: J033088M01

    full reading [+] show sequence

    Nucleotide sequence: J033088M01 - full reading 
    GTTCTTTCTC TCCTCCCACT CCGCTAGCTC CGGCCACCAA CTTTGACCCG 
    TCCTCCTCCT CCGCATCCCC CATCCCCTCC TCCCCGGCGG CGGCGGCGGC 
    GCGGAGGCGG CGGCACGGGA GCGGCTAGTG GTTTCGTCGG CGGAGGCGGA 
    GGCGGGGCCA AGATGTTCGG GCGCGCGCCG AAGAAGAGCG ACAACACCAA 
    GTACTACGAG ATCCTGGGGG TCCCCAAGAC CGCCTCCCAG GACGACCTCA 
    AGAAGGCGTA CCGCAAGGCC GCCATCAAGA ACCACCCCGA CAAGGGCGGC 
    GACCCCGAGA AGTTCAAGGA GCTTGCACAA GCTTATGAGG TATTGAGTGA 
    CCCGGAGAAA CGTGAAATCT ATGACCAATA TGGTGAAGAT GCCCTCAAGG 
    AAGGAATGGG TGGAGGCGGA TCCCATGTTG ATCCATTTGA CATCTTTTCA 
    TCATTCTTTG GACCTTCTTT TGGTGGTGGT GGCAGCAGCA GGGGCAGAAG 
    GCAAAGGAGG GGAGAGGATG TGATCCATCC GCTTAAGGTT TCTCTAGAAG 
    ATCTTTACAA TGGTACTTCA AAGAAGCTCT CTCTTTCCCG CAATGTCCTC 
    TGCGCCAAGT GCAAGGGCAA GGGTTCCAAG TCTGGTGCTT CCATGAGGTG 
    CCCAGGTTGC CAGGGGTCTG GCATGAAAAT CACCATCCGC CAGCTGGGGC 
    CTTCCATGAT ACAGCAGATG CAGCAGCCTT GCAATGAGTG TAAGGGGACT 
    GGAGAGAGCA TTAATGAGAA GGATCGCTGC CCAGGCTGCA AGGGCGAGAA 
    GGTTATTCAG GAGAAGAAGG TTCTGGAGGT TCACGTTGAG AAGGGGATGC 
    AACACAATCA GAAGATCACT TTCCCTGGTG AAGCTGATGA GGCGCCTGAT 
    ACCGTTACGG GAGACATTGT ATTCGTCCTC CAGCAGAAGG ACCACTCCAA 
    GTTCAAAAGG AAGGGCGATG ATCTCTTTTA TGAGCACACC TTATCTCTGA 
    CTGAAGCACT TTGTGGTTTC CAATTTGTCC TGACACATCT GGACAACAGA 
    CAGCTGCTCA TTAAGTCAAA CCCCGGTGAA GTTGTTAAGC CTGACCAATT 
    CAAGGCAATA AACGATGAGG GAATGCCAAT GTACCAGAGG CCTTTCATGA 
    AGGGGAAGCT CTACATTCAT TTCGCGGTGG AGTTCCCTGA TTCCCTGGCG 
    CCTGAACAAT GCAAGGCTCT CGAGGCTGTG CTTCCACCGA AGCCTGCATC 
    CCAGCTGACA GAAATGGAGA TAGATGAATG CGAGGAGACC ACGATGCACG 
    ATGTCAACAA CATTGAGGAA GAGATGCGCA GGAAAGCCCA AGCTGCTCAG 
    GAGGCGTATG ATGAGGACGA TGAGATGCCT GGAGGTGCCC AGAGAGTTCA 
    GTGCGCGCAA CAGTAAGCAG AGTATGTCAT CTAGGAAACT CGTCATTGGT 
    TCACAAATCA ACGTCGTCGC AAAGGTTTGC CGTAAATTTT TGGACCCAAA 
    GATGATTGTG CTCTGTTTCC CGTTGCGGCG AACATGAAGA TAGTGAAGCT 
    GATTTTACAC CCCTTAAGCC GGGACTGTAT CCCTTTTGTT TGCGACTTAA 
    AAAATGCTAC TCGTATCTAG TAATAGCTGG CTACGTTTTA CTATGCTGTG 
    AGACTCGTAG AGTTTTACCT CCTAAAAAGA AACTCGGTAT GTTGTGAATG 
    CTACAACTGA CACTGCACCG TGTGCAGTGG CTCAACATTT TTTGTGGTCA 
    GATGGCTATG CTTGCACCGT GAGACTCGTA GAGTTGTGCA TCTAAATATG 
    CATTTCTTCC TTTGCTGTT

    Gene models with high sequence identity

    1. AT3G44110.1 [+] show detail - DNAJ homologue 3
      E-value: 4e-176; Score: 615.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heat shock protein DnaJ, N-terminal 5.9e-37
    superfamily HSP40/DnaJ peptide-binding 1.2e-21
    superfamily Heat shock protein DnaJ, cysteine-rich domain 4.5e-19
    superfamily HSP40/DnaJ peptide-binding 1.6e-17
    Coil coiled-coil 0
    HMMPanther HSP40, SUBFAMILY A, MEMBERS 1,2,4 2.6e-201
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 2.6e-201
    Gene3D Heat shock protein DnaJ, N-terminal 1.8e-23
    Gene3D no description 1.2e-25
    Gene3D no description 3.2e-25
    PatternScan Heat shock protein DnaJ, conserved site 0
    HAMAP Chaperone DnaJ 24.28
    HMMSmart Heat shock protein DnaJ, N-terminal 3.4e-28
    HMMPfam Chaperone DnaJ, C-terminal 9e-27
    HMMPfam Heat shock protein DnaJ, N-terminal 1.2e-25
    HMMPfam Heat shock protein DnaJ, cysteine-rich domain 1.5e-18
    ProfileScan Heat shock protein DnaJ, N-terminal 23.644
    ProfileScan Heat shock protein DnaJ, cysteine-rich domain 24.785
    FPrintScan Heat shock protein DnaJ 4.7e-54
    FPrintScan Heat shock protein DnaJ 4.7e-54
    FPrintScan Heat shock protein DnaJ 4.7e-54
    FPrintScan Heat shock protein DnaJ 4.7e-54
    FPrintScan Heat shock protein DnaJ 4.7e-54
    FPrintScan Heat shock protein DnaJ 4.7e-54
    FPrintScan Heat shock protein DnaJ 4.7e-54
    FPrintScan Heat shock protein DnaJ 4.7e-54

    See the detailed result >

    AT3G44110.1

    Model type
    Protein coding
    Short Description
    DNAJ homologue 3
    Curator Summary
    homologous to the co-chaperon DNAJ protein from E coli
    Computational Description
    DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ (InterPro:IPR003095), Chaperone DnaJ (InterPro:IPR012724); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1); Has 26899 Blast hits to 26588 proteins in 3465 species: Archae - 213; Bacteria - 10134; Metazoa - 4292; Fungi - 2434; Plants - 2563; Viruses - 88; Other Eukaryotes - 7175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR