K22724

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22724

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22724

Determination of introduced cDNA(s)

  • J033132F12 - Rice Full-length cDNAs - Original: J033132F12

    full reading [+] show sequence

    Nucleotide sequence: J033132F12 - full reading 
    GACCTTCCGC CTCCGCAAGA AAGAAAGAAA AAGAGGGGAA GCAAAGCGCA 
    GAGGCGGCCG TCGCAGCAGC AACACAAGTC AGGGGAGGAG AGAGAGGCCG 
    CGCCGCCGCA GATCTGTGGC CGCGTTAGGG TTTCTTCGCC GGAATCGAGC 
    GAGGAAGTAG GAGGGAGAGG AGGAGGAGGA GGAGGGCGAC GAGTAGGAGG 
    CGGCGGCGGC GGAGATGGAC GTGGTGAAGG CGGCGCAGCT CTCGGGGCGG 
    ACGCTGGAGA AGGTGGTGGT GCACCCGCTG GTGCTGCTCA GCATCGTCGA 
    CCACTACAAC CGCGTCGCCC GCGACACCCG CAAGCGCGTC GTCGGCGTGC 
    TCCTCGGCAC CTCCTCCCGC GGTTCCGTCG ATGTCACCAA CTCCTACGCC 
    GTGCCGTTTG AAGAGGATGA CAAGGATCCG AGGATCTGGT TCCTCGATCA 
    TAATTACCAC GAATCGATGT TTTCCATGTT CAAGAGGATC AACGCCAAGG 
    AGCATGTTGT TGGCTGGTAC AGCACCGGTC CAAAACTCAG GGAGAACGAC 
    TTGGATATAC ACGCACTATT CAATAACTAT GTTCCTAACC CTGTCCTGGT 
    GATTATTGAT GTTCAACCCA AGGAGTTAGG AATACCCACC AAAGCATACT 
    ATGCTGCGGA GGAGGTTAAA GAGAATGCTA CTCAAAAAAG TCAAAAGGTG 
    TTTGTTCATG TTCCTTCAGA AATAGCTGCC CACGAGGTTG AGGAAATCGG 
    AGTTGAGCAT CTTCTGAGGG ATGTCAAGGA CACAACAATA AGCACGCTTG 
    CGACAGAGGT AACCAGCAAG CTTGCAGCCT TGAAAGGACT GGACGCAAGG 
    CTCAGGGAGA TCCGTGGGTA CTTAGATCTT GTAATTGAAG GGAAGCTCCC 
    ACTGAATCAT GAGATTTTGT ACCACTTGCA GGATGTGTTT AATCTGCTCC 
    CCAATCTCAA TGTAAACGAG CTTATTAAAG CCTTTGCAGT TAAAACAAAC 
    GATATGATGT TGGTCATATA CTTGTCTTCT CTTATCCGGA GTGTCATCGC 
    ACTCCATAAC TTGATCAATA ACAAGATGCT AAACAAGGAG CATGAGAAAG 
    CCGAGGATTC GAAGCCAACC GCCATACCTA GTGCTGCTGG GAGCTGAATG 
    TGCTTTATTT GCCTTAGATT TTGGACCCAG TGGAAGCCAA AAGAATTGTG 
    ACATGTTAGC ATGATGGCGT TTGAACCAAT TGTCTTTGAC CTTGGTTTTA 
    CACTTTCGAT GTTTATTTCA TGTACGATAA GGTCAACGGC AAACTTTACA 
    TTCTGTGAGC TTAGGTCATA CTACCTCTTG AGCTTTCATC TTGATCTTAT 
    ATACAATGTT TCATGGGGTG CATCATGTTT TGTGATGCGG ATTGTCGTAC 
    GATTAACTTC TAGTAAATGT TTACTTGACG C

    Gene models with high sequence identity

    1. AT5G05780.1 [+] show detail - RP non-ATPase subunit 8A
      E-value: 8e-161; Score: 563.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 26S PROTEASOME REGULATORY SUBUNIT 7, PSD7 1.2e-173
    HMMPanther EIF3F-RELATED 1.2e-173
    HMMPfam Mov34/MPN/PAD-1 9.6e-30
    HMMSmart Mov34/MPN/PAD-1 6.9e-29

    See the detailed result >

    AT5G05780.1

    Model type
    Protein coding
    Short Description
    RP non-ATPase subunit 8A
    Curator Summary
    Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity.
    Computational Description
    RP non-ATPase subunit 8A (RPN8A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G11270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR