K22728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22728

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22728

Determination of introduced cDNA(s)

  • J023080P13 - Rice Full-length cDNAs - Original: J023080P13

    full reading [+] show sequence

    Nucleotide sequence: J023080P13 - full reading
    GTAGATTTTG GGGGAACAAG GAGAGAGAGA AGAGGAGAGA AGAGGCCATT 
    CTTCTCTTCT CCACCACCTA CACTCTCTCT CTCTCTCTCT CATCTCCTGC
    CTTCTCTCTA GGATCGCCGC CATCCACCAC ATCCCACGCT TTTTACTGCC
    GCACACATAA GAGCACAGGA GGAGGAGGAA GAAGAAGAGT AGAGAGAGAA
    AGATAGAGAG AGGAGCAGGA GAAGCATTCG TTCATCCAGG AGAGAGAGAG
    GCTTCAAGTT CTTGGTCTCC TGCTCTGCCA TGTCCATGGA TGAAGGGTAT
    GGCCCTACCT GGGACAGCGA CGACGAGTAC GACAACTTCA TACGCAAGAT
    GAACCCGCCA AGGATCGAGA TCGATAATGA TTCATGCAAC GACGCCACGA
    TTGTCAGGGT AGACAGTGCA AATGAGTATG GGATTCTCCT TGAAGTAATC
    CAAGTTCTGA TTGATCTGAA TCTTGTGATA AGTAAGGCGT ACATAACCTC
    AGATGGTGGA TGGGTCATGG ATGTCTTTGA TATAACTGAC AAAGAAGGGC
    AGAAGCTTAA AGATAAGGCT ACTATTGCGC GAATTGAAGA CTACATTTGT
    AAGTCTTTGG GTGCAGATTC AAGATACATA CCTTCTCGCC GGAGATCAGT
    AGATGTCGCT GCTTCGAGTG ATCACAATGT CATTGAGCTG ACAGGGACTG
    ACCGGCCAGG CCTCCTCTCT GAAGTCAGTG CAGTTCTTGC AAGCCTCAAG
    TGCAACGTTG TCAGCGCCGA GATCTGGACC CATAACACCA GGGCTGCCGC
    CGTGATGCGA GTCACCGATG AGGGCACCGG ATCGGCCGTC ACGGACGCCG
    ACAGGCTCGA GAGGATCAGG GATAGGCTGT CCTACCTTCT CCGGGGAGGC
    AACCTCTCGC GCGGCGCGGC CATGGCGGTG TCGACGGGGA CCTGCAGCAC
    GCACACCGAG AGGAGGCTGC ACCAGATGAT GCTGGATGAT GGCGACCATG
    AGCAGCTCCA TCGGCATCCT CCGAATCAGT CCCAGAGGCC CAATGTGACG
    GTGAGCAATT GGAATGACAA GGACTACTCG GTGGTCACCA TCCGATGCAA
    GGACCGGCCG AAGCTTCTCT TCGACACGGT TTGCACCTTG ACAGACCTGC
    ATTATGTTGT TTTCCATGCA AATATTGATG CCAAGGATAA TCAAGCTTAC
    CAGGAATTCT ATGTGAGGCA TGTAAATGGA TCTCCAATGC ACACTGAAGC
    TGACAGGTTG CGAGTCATCC AGTGCCTTGA AGCTGCTATT GAACGGAGGG
    TGTCTGAGGG TGTGAAGCTT GAGCTCTGCA CAAATGACAA GGTCGGCCTC
    CTGTCAGAGG TCACCCGAAT CTTCCGCGAG AACAGCCTGA CTGTCACAAG
    AGCGGAGGTG AGCACGAGAG GAAGGATGGC TGTCAACACA TTCTATGTTC
    GCGATTCCAC AGGAGGGACG GTTGATCAGA AGACAGTAGA CTCCATCAGG
    CAAGCCATAG GCCAGAACAT TCAGGTGAAA GGCCAGCCTG AGCCATCAGA
    GCCACAGAAG AAAGAGTCAC CCACATGGTT CCTCTTCGCC AACCTGTTTC
    GACCGAGATC TCTCTACAGT TTCGGGATGT TCATGCGCTG ATCTCATGAG
    CCGATCCCGA AAACCGCACT GAAAATTCTT AGCTGACGAA GAGGCCCAAG
    AATTCAGGAA GTTACAGAGA GGGCCTTCAT TCTGTTCAAG ACTTACCAGT
    GGAGTGGCGC AGGAATGGAA TAGTAGTGTA GGGGTTGTTT ATAGATCATC
    ATCATTTGTA AATATACTCG AATTCGCCAT GTCCACATTG TACATATGTA
    GATAAATCAT GTAAATATAA CTGTGGAAGA TATTGTTTTA TAAGAAATAT
    GTTAGATT

    Gene models with high sequence identity

    1. AT1G69040.2 [+] show detail - ACT domain repeat 4
      E-value: 6e-138; Score: 488.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.9e-05
    HMMPfam Amino acid-binding ACT 6.5e-05
    HMMPfam Amino acid-binding ACT 5.2e-10
    HMMPfam Amino acid-binding ACT 1.4e-07
    superfamily ACT-like 8.1e-16
    superfamily ACT-like 3.9e-11
    superfamily ACT-like 1.4e-10
    superfamily ACT-like 0.00015

    See the detailed result >

    AT1G69040.2

    Model type
    Protein coding
    Short Description
    ACT domain repeat 4
    Curator Summary
    ACT-domain containing protein involved in feedback regulation of amino acid metabolism
    Computational Description
    ACT domain repeat 4 (ACR4); FUNCTIONS IN: amino acid binding; INVOLVED IN: regulation of cellular amino acid metabolic process, response to cytokinin stimulus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 5 (TAIR:AT2G03730.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR