K22728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22728

Determination of introduced cDNA(s)

J023080P13 - Rice Full-length cDNAs - Original: J023080P13

full reading [+] show sequence

GTAGATTTTG GGGGAACAAG GAGAGAGAGA AGAGGAGAGA AGAGGCCATT 
CTTCTCTTCT CCACCACCTA CACTCTCTCT CTCTCTCTCT CATCTCCTGC 
CTTCTCTCTA GGATCGCCGC CATCCACCAC ATCCCACGCT TTTTACTGCC 
GCACACATAA GAGCACAGGA GGAGGAGGAA GAAGAAGAGT AGAGAGAGAA 
AGATAGAGAG AGGAGCAGGA GAAGCATTCG TTCATCCAGG AGAGAGAGAG 
GCTTCAAGTT CTTGGTCTCC TGCTCTGCCA TGTCCATGGA TGAAGGGTAT 
GGCCCTACCT GGGACAGCGA CGACGAGTAC GACAACTTCA TACGCAAGAT 
GAACCCGCCA AGGATCGAGA TCGATAATGA TTCATGCAAC GACGCCACGA 
TTGTCAGGGT AGACAGTGCA AATGAGTATG GGATTCTCCT TGAAGTAATC 
CAAGTTCTGA TTGATCTGAA TCTTGTGATA AGTAAGGCGT ACATAACCTC 
AGATGGTGGA TGGGTCATGG ATGTCTTTGA TATAACTGAC AAAGAAGGGC 
AGAAGCTTAA AGATAAGGCT ACTATTGCGC GAATTGAAGA CTACATTTGT 
AAGTCTTTGG GTGCAGATTC AAGATACATA CCTTCTCGCC GGAGATCAGT 
AGATGTCGCT GCTTCGAGTG ATCACAATGT CATTGAGCTG ACAGGGACTG 
ACCGGCCAGG CCTCCTCTCT GAAGTCAGTG CAGTTCTTGC AAGCCTCAAG 
TGCAACGTTG TCAGCGCCGA GATCTGGACC CATAACACCA GGGCTGCCGC 
CGTGATGCGA GTCACCGATG AGGGCACCGG ATCGGCCGTC ACGGACGCCG 
ACAGGCTCGA GAGGATCAGG GATAGGCTGT CCTACCTTCT CCGGGGAGGC 
AACCTCTCGC GCGGCGCGGC CATGGCGGTG TCGACGGGGA CCTGCAGCAC 
GCACACCGAG AGGAGGCTGC ACCAGATGAT GCTGGATGAT GGCGACCATG 
AGCAGCTCCA TCGGCATCCT CCGAATCAGT CCCAGAGGCC CAATGTGACG 
GTGAGCAATT GGAATGACAA GGACTACTCG GTGGTCACCA TCCGATGCAA 
GGACCGGCCG AAGCTTCTCT TCGACACGGT TTGCACCTTG ACAGACCTGC 
ATTATGTTGT TTTCCATGCA AATATTGATG CCAAGGATAA TCAAGCTTAC 
CAGGAATTCT ATGTGAGGCA TGTAAATGGA TCTCCAATGC ACACTGAAGC 
TGACAGGTTG CGAGTCATCC AGTGCCTTGA AGCTGCTATT GAACGGAGGG 
TGTCTGAGGG TGTGAAGCTT GAGCTCTGCA CAAATGACAA GGTCGGCCTC 
CTGTCAGAGG TCACCCGAAT CTTCCGCGAG AACAGCCTGA CTGTCACAAG 
AGCGGAGGTG AGCACGAGAG GAAGGATGGC TGTCAACACA TTCTATGTTC 
GCGATTCCAC AGGAGGGACG GTTGATCAGA AGACAGTAGA CTCCATCAGG 
CAAGCCATAG GCCAGAACAT TCAGGTGAAA GGCCAGCCTG AGCCATCAGA 
GCCACAGAAG AAAGAGTCAC CCACATGGTT CCTCTTCGCC AACCTGTTTC 
GACCGAGATC TCTCTACAGT TTCGGGATGT TCATGCGCTG ATCTCATGAG 
CCGATCCCGA AAACCGCACT GAAAATTCTT AGCTGACGAA GAGGCCCAAG 
AATTCAGGAA GTTACAGAGA GGGCCTTCAT TCTGTTCAAG ACTTACCAGT 
GGAGTGGCGC AGGAATGGAA TAGTAGTGTA GGGGTTGTTT ATAGATCATC 
ATCATTTGTA AATATACTCG AATTCGCCAT GTCCACATTG TACATATGTA 
GATAAATCAT GTAAATATAA CTGTGGAAGA TATTGTTTTA TAAGAAATAT 
GTTAGATT

Gene models with high sequence identity

AT1G69040.2 [+] show detail - ACT domain repeat 4
E-value: 6e-138; Score: 488.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	4.9e-05
HMMPfam	Amino acid-binding ACT	6.5e-05
HMMPfam	Amino acid-binding ACT	5.2e-10
HMMPfam	Amino acid-binding ACT	1.4e-07
superfamily	ACT-like	8.1e-16
superfamily	ACT-like	3.9e-11
superfamily	ACT-like	1.4e-10
superfamily	ACT-like	0.00015

See the detailed result >

AT1G69040.2

Model type: Protein coding
Short Description: ACT domain repeat 4
Curator Summary: ACT-domain containing protein involved in feedback regulation of amino acid metabolism
Computational Description: ACT domain repeat 4 (ACR4); FUNCTIONS IN: amino acid binding; INVOLVED IN: regulation of cellular amino acid metabolic process, response to cytokinin stimulus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 5 (TAIR:AT2G03730.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR