K22731

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22731

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22731

Determination of introduced cDNA(s)

  • J033133B14 - Rice Full-length cDNAs - Original: J033133B14

    full reading [+] show sequence

    Nucleotide sequence: J033133B14 - full reading 
    GACGGCACCA CCATCGAACA AAGAATAGCG CGCACGCATT CGCCTCGACG 
    CCGCATACTC GCGTCCACGA GCCCCGCGAG AAACAGCTAT CCACGTCATC 
    CGCGGCGGCC GCCCGCCGTT TTCCCTTTTC CAGGCGCGAC TCGGCGGCCG 
    CACCCGGTTG CGCACGCCGC TCCCCCCCCC CCCCCCCCCC ACGCCACGCT 
    CCCCCGCCTC GTTTCCCCCG CGCGGCCGCG CCAGAAAGGG GAGAAACGCT 
    TCACGCGCGC GGCGCACCCT AGCTTGGGCC ACGATGCCAT CCGCTAACGT 
    GCGCGGGGCG CAGCCTAGCG CCGACCGCAG GTTAAGTACG CTGGTGCGCC 
    ACCTACTGCC TTCCTCCGCA CGAACAGCAA CCACCACCAG CACCTCCTCC 
    TCCGCCGCCG ACGCCGACTC CTCCCTCCAA GCTTTCCCCA CCATGGCGTC 
    GTCGTCCGTC TTCGCTGGCC TCGCGCAGGC GCCGGAGGAC CCCATCCTCG 
    GGGTGACGGT CGCGTACAAC AAGGATCCCA GCCCCGTGAA GGTCAATCTC 
    GGCGTCGGCG CCTACCGGAC CGAGGAAGGG AAGCCCCTGG TGCTGAATGT 
    GGTCAGGCGC GCTGAGCAGA TGCTGATCAA CAACCCGTCA CGTGTTAAGG 
    AGTATTTGCC GATCACTGGA CTGGCCGATT TCAATAAGCT GAGTGCTAAG 
    CTTATTTTTG GTGCTGACAG TCCTGCCATT CAAGAGAATA GGGTGGCTAC 
    AGTTCAGTGC TTGTCAGGAA CTGGTTCTTT AAGGGTGGGA GGTGAATTTC 
    TTGCAAGGCA TTATCATGAA CGCACTATAT ACATCCCACA GCCAACCTGG 
    GGGAATCACC CCAAAGTGTT CACTTTAGCT GGCCTGACTG TTAGGAGTTA 
    CCGCTACTAT GATCCTGCAA CCCGTGGACT GGATTTCCAA GGGCTGTTAG 
    AAGATCTCGG TTCAGCTCCT TCAGGTGCAA TTGTACTGCT TCATGCTTGT 
    GCCCACAACC CTACTGGAGT AGACCCAACT TTGGACCAGT GGGAACAGAT 
    CAGGCAGTTG ATGAGATCAA AAGCATTGCT GCCATTCTTT GATAGCGCTT 
    ATCAGGGATT TGCAAGTGGA AGTCTTGACC AAGATGCTCA ATCAGTGCGC 
    ATGTTTGTTG CTGATGGTGG TGAATTGCTC ATGGCTCAGA GCTACGCTAA 
    GAACATGGGA TTGTATGGAG AGCGTGTCGG TGCTTTAAGC ATAGTTTGTG 
    GAAGTGCTGA TGTAGCTGTC AGGGTTGAAA GTCAACTTAA GCTTGTAATT 
    AGGCCTATGT ATTCAAACCC TCCTATTCAT GGTGCATCTA TCGTGGCTAC 
    CATACTTAAG GACAGTGCAA TGTTCAATGA ATGGACTGTG GAGCTGAAGG 
    GCATGGCTGA TAGGATTATT AGCATGAGGC AACAGCTTTT TGATGCTCTG 
    AAAACGAGAG AAACTCCTGG AGACTGGAGT CACATCATTA AGCAGATCGG 
    AATGTTCACT TTCACTGGGC TCAACAGTGA TCAAGTGGCT TTCATGAGGC 
    AGGAATACCA CATTTACATG ACATCTGATG GGAGGATCAG TATGGCTGGT 
    TTGAGCGGGA GGACCATTCC GCATCTTGCA GATGCAATCC ATGCCGCAGT 
    CACAAAACTG AAGTGAATGA TGGTAGCATA GCAGCTCCCT CCAAGAATAA 
    CATCTTAAAA CCATCCGCAG CAGTGTTCTG AGGATTCAGA CAGTGATGTT 
    TGCTGGCTGA GCACATCCTG GAAGTTTCCT TGTAATAGAC TCGTGTGACT 
    TGCTTTTGGG AGCAGTTTTG TACCAGTGGA TTCAGAAAAA GTGGTGATTT 
    CGAATCACCT AATAAGCTCC ATCGGTGATG CTTTTACC

    Gene models with high sequence identity

    1. AT5G11520.1 [+] show detail - aspartate aminotransferase 3
      E-value: 0; Score: 700.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 3.6e-111
    superfamily Pyridoxal phosphate-dependent transferase, major domain 6.9e-121
    HMMPanther Aspartate/other aminotransferase 1.3e-264
    HMMPfam Aminotransferase, class I/II 9.8e-97
    FPrintScan Aspartate/tyrosine aminotransferase 2.9e-38
    FPrintScan Aspartate/tyrosine aminotransferase 2.9e-38
    FPrintScan Aspartate/tyrosine aminotransferase 2.9e-38
    FPrintScan Aspartate/tyrosine aminotransferase 2.9e-38

    See the detailed result >

    AT5G11520.1

    Model type
    Protein coding
    Short Description
    aspartate aminotransferase 3
    Curator Summary
    Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves.
    Computational Description
    aspartate aminotransferase 3 (ASP3); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity; INVOLVED IN: leaf senescence, nitrogen compound metabolic process; LOCATED IN: peroxisome, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR