K22732

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22732

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22732

Determination of introduced cDNA(s)

  • J033150K18 - Rice Full-length cDNAs - Original: J033150K18

    full reading [+] show sequence

    Nucleotide sequence: J033150K18 - full reading 
    GGCTGCTACT TCCACTAGGG TTTCGTCTTG CTTCTCCCGC TGCTCGCCTC 
    GCCTCCTCGA CGATCTGAGA TCATCGAGAT CGATTGAGTG GAGCTAGGCG 
    GCGGCTAGGG CGAGATGGCG CTCGTATTGC ATGCTGGCAG TGGAAACAAG 
    AATGCATTCA AGGCACTCAT TGCTGCCGAG TACTCTGGTG TCAAGGTTGA 
    GTTGGTGAAG AACTTTCAGA TGGGTGTCTC CAACAAGACA CCTGAGTTTC 
    TCAAGATGAA TCCTATTGGG AAGATTCCTG TTCTAGAGAC TCCTGATGGT 
    CCTGTTTTTG AGAGCAATGC GATTGCACGA TATGTTACCC GCTCGAAGGC 
    TGACAACCCA CTCTATGGGT CTTCACTGAT TGAATATGCC CACATCGAGC 
    AGTGGAATGA CTTTTCGGCC ACAGAGGTTG ATGCTAATAT TGGAAAATGG 
    CTCTACCCAC GGCTAGGAAT TGCTCCCTAT GTTGCTGTGA GTGAGGAAGC 
    AGCTATTGCT GCTTTGAAGA GATCATTGGG TGCCCTCAAC ACACACCTTG 
    CATCAAACAC ATACCTTGTT GGCCATTCGG TGACTCTTGC TGATATTGTG 
    ATGACCTGTA ACCTCTACAT GGGCTTTGCT CGGATCATGA CCAAGAGTTT 
    TACTTCTGAG TTCCCTCATG TTGAGAGGTA CTTCTGGACC ATGGTTAATC 
    AGCCAAACTT TAAGAAAGTC TTGGGTGATG TGAAGCAGGC AGAGTCTGTC 
    CCACCAGTTC AAAAGAAGGC TCCACCACCA AAGGAGCAGA AGCCGAAGGA 
    AGCCAAGAAA GAGGCTCCAA AACCTAAGGC AGTTGAGAAA CCAGAGGAGG 
    AAGAGGAGGC ACCAAAGCCA AAGCCAAAGA ACCCTCTTGA TTTGCTCCCT 
    CCAAGCAAGA TGATCCTTGA TGAGTGGAAG AGGTTATACT CAAACACAAA 
    AACAAATTTC CGTGAGGTTG CTATCAAGGG TTTCTGGGAT ATGTATGACC 
    CAGAAGGTTA CTCCCTGTGG TTTTGTGACT ACAAATACAA TGACGAGAAC 
    ACTGTGTCCT TCGTGACCAT GAACAAGGTT GGTGGGTTCC TGCAGCGAAT 
    GGACCTGTGC CGCAAATATG CTTTCGGGAA GATGCTTGTG ATCGGCTCTG 
    AGCCGCCATT CAAGGTGAAG GGTCTTTGGC TCTTCCGTGG CCCCGAGATC 
    CCCAAGTTCG TCATGGATGA AGTCTATGAC ATGGAGCTCT ATGAGTGGAC 
    CAAGGTTGAC ATCTCAGATG AGGCCCAGAA GGAGCGCGTC AGCGCCATGA 
    TTGAGGACCT GGAGCCATTT GAGGGCGAGT CGTTGCTGGA TGCGAAATGC 
    TTCAAGTGAG GCGTCGTTGG AGCAAGGATA CCGTGGAAAA TGAGCTATTT 
    AGGTTTTGGA TTTACCCTTC TACAATAGTT CATGATTATG AAAAAAAAAA 
    TACTATCACC ATGTGGCTAT ATTAGTCAAT ATTGAGTGTG CTGGTCTTTT 
    CTTTTTGTAC TGTTTGCTAG AGTTTTGGCC CTTTTTAACC TTGTAGTTAA 
    GTTGTTAAGA CACTTATCCA TCGAATCATC GTCAGAAACA CACCATTCGA 
    ATCTGCTGTT GCTCATGTGT TAAACTTGCC ATTCTGATAA TGTTTTGGAA 
    ATAGGCAACA AAACGAGTTA TGGTGCTGGG TTATTTTATG TATTTTATTC 
    TGTTGTCC

    Gene models with high sequence identity

    1. AT1G57720.2 [+] show detail - Translation elongation factor EF1B, gamma chain
      E-value: 9e-170; Score: 593.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thioredoxin fold 1.8e-13
    Gene3D Glutathione S-transferase, C-terminal-like 9.8e-39
    HMMPanther ELONGATION FACTOR 1 GAMMA 5.3e-104
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 5.3e-104
    ProfileScan Translation elongation factor EF1B, gamma chain, conserved 78.275
    ProfileScan Glutathione S-transferase, N-terminal 20.011
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 25.782
    HMMPfam Translation elongation factor EF1B, gamma chain, conserved 5.7e-42
    HMMPfam Glutathione S-transferase, N-terminal 2.1e-13
    HMMPfam Glutathione S-transferase, C-terminal 7.6e-11
    superfamily Translation elongation factor EF1B, gamma chain, conserved 8.8e-61
    superfamily Glutathione S-transferase, C-terminal-like 9.1e-38
    superfamily Thioredoxin-like fold 1.4e-19

    See the detailed result >

    AT1G57720.2

    Model type
    Protein coding
    Short Description
    Translation elongation factor EF1B, gamma chain
    Computational Description
    Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G09640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR