K22744

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22744

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22744

Determination of introduced cDNA(s)

  • J023012P17 - Rice Full-length cDNAs - Original: J023012P17

    full reading [+] show sequence

    Nucleotide sequence: J023012P17 - full reading 
    GCGGAATCGA TCTCTTGTGT TTGTTGATCG ATCGAGGTCG AGGATGCCGA 
    AGAACAAGGG GAAGGGAGGG AAGAACCGGA AGCGGGGGAA GAACGAGGCG 
    GACGACGAGA AGCGGGAGCT GGTGTTCAAG GAGGACGGGC AGGAGTACGC 
    GCAGGTGGCG CGGATGCTGG GCAACGGGCG GTGCGAGGCG CAGTGCATCG 
    ACGGGACGAA GCGGCTGTGC CACATCCGCG GGAAGATGCA CAAGAAGGTG 
    TGGATCGCGG CGGGGGACAT CGTCCTCGTC GGCCTCCGCG ACTACCAGGA 
    CGACAAGGCC GACGTCATCC TCAAGTACAT GAACGACGAG GCCCGCCTCC 
    TCAAGGCCTA CGGCGAGATC CCCGACCACG TCCGCCTCAA CGAGGGCGTC 
    GTCGACGAGG ACGACGCCGC CGCCCACGAC GACTACATCC AGTTCGAGGA 
    CGAGGACATC GACAAGATCT GATCTCATCT ACCCACTGCT GCTGCTGCTT 
    CATCAGTCCA ATGGTACAAA GAAACAATCC AAGAATTGCT TCTTGTTACT 
    TGCTACTATT GTGATGTGTG GTGTGATATT ATAATCACGG TGGTGTGATG 
    TGTGAGGTCG TCTGCCTGAG AGAGACCTGT ATATATGGAA GAGATTCGGG 
    GGGCAATTAT TCTGCCCAAT AATCAAATAT TGAATCGAAT TGCTCGCTTT 
    ACGCGATGGG GTTCATCTAG TTTTGTTCTA CTCTGGTTCA TGTCTGATCA 
    GTCTCTGTTG TTACACAGTT TTCATTACTT AGGGCTGTAG CCTGTATGCA 
    CTGGAACTAA TATATTAACA GTATTTAGTA TTCTGACCG

    Gene models with high sequence identity

    1. AT2G04520.1 [+] show detail - Nucleic acid-binding, OB-fold-like protein
      E-value: 2e-55; Score: 213.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Nucleic acid-binding, OB-fold-like 3.7e-47
    HMMSmart Translation initiation factor 1A (eIF-1A) 2.2e-48
    ProfileScan S1, IF1 type 31.812
    PatternScan Translation initiation factor 1A (eIF-1A), conserved site 0
    HMMTigr Translation initiation factor 1A (eIF-1A) 1.4e-34
    BlastProDom Translation initiation factor 1A (eIF-1A) 2e-26
    Gene3D Nucleic acid-binding, OB-fold 4.3e-52
    HMMPanther Translation initiation factor 1A (eIF-1A) 1.5e-72
    HMMPfam S1, IF1 type 6e-27

    See the detailed result >

    AT2G04520.1

    Model type
    Protein coding
    Short Description
    Nucleic acid-binding, OB-fold-like protein
    Computational Description
    Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), S1, IF1 type (InterPro:IPR006196), Translation initiation factor 1A (eIF-1A), conserved site (InterPro:IPR018104), Translation initiation factor 1A (eIF-1A) (InterPro:IPR001253); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G35680.2); Has 921 Blast hits to 921 proteins in 273 species: Archae - 305; Bacteria - 0; Metazoa - 209; Fungi - 83; Plants - 55; Viruses - 0; Other Eukaryotes - 269 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR