K22802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22802

Determination of introduced cDNA(s)

  • J013094D16 - Rice Full-length cDNAs - Original: J013094D16

    full reading [+] show sequence

    Nucleotide sequence: J013094D16 - full reading
    TCGGTCTCCA TTTCGCGTCT CCTCCTCCTC CTCCTCCGGC CATCTCACCC 
    TCCCGGCGAG CAGCGAGCGG GAGGCCTCCG CCACCGCCGC CGCCGCCGCC
    GCCGTCGCCG CCCGATGGGG AAGCCGGGGA AGCTAGCGCT GCCCTCGCAC
    GAGTCAACCA TCGGCAAATT CCTGACGCAG AGCGGGACGT TCAAGGACGG
    CGATCTGCTC GTCAACAAGG ACGGCCTCCG CATCGTCTCG CAGAGCGAGG
    AAGGGGAGGC CCCTCCTATA GAACCTTTAG ATCATAATCA GTTGAGTCTA
    GATGATCTAG ACGCAATCAA AGTTATCGGT AAAGGTAGTA GTGGAATCGT
    GCAGTTGGTT CGCCACAAAT GGACTGGCCA GTTTTTTGCT CTGAAGGTAA
    TACAACTCAA TATCCAGGAG AATATACGCA GACAGATTGC GCAGGAATTG
    AAAATCAGCT TGTCAACACA GTGCCAATAT GTTGTTGCAT GCTGTCAGTG
    TTTTTACGTT AATGGTGTCA TTTCAATTGT TTTGGAGTAT ATGGACAGTG
    GCTCTCTCTC AGATTTCCTG AAGACAGTTA AAACCATTCC AGAGCCCTAC
    CTTGCTGCAA TCTGTAAGCA GGTGCTAAAA GGACTGATGT ACTTACATCA
    TGAGAAGCAC ATCATACACC GAGATCTGAA GCCGTCAAAT ATATTAATAA
    ATCATATGGG TGAAGTAAAA ATATCCGACT TTGGTGTTAG TGCCATCATT
    GCTAGTTCCT CGGCACAACG AGATACATTT ACTGGGACAT ATAACTACAT
    GGCGCCAGAA AGAATCAGTG GGCAAAAACA TGGTTATATG AGTGATATCT
    GGAGCTTGGG CCTCGTTATG CTAGAATTGG CCACTGGTGA ATTTCCATAT
    CCTCCTCGTG AAAGCTTTTA TGAACTCCTT GAAGCTGTTG TCGACCACCC
    ACCACCTTCT GCTCCATCAG ACCAGTTTTC AGAGGAATTC TGTTCATTCG
    TCTCTGCATG TATCCAAAAG AATGCTTCGG ATAGGTCATC TGCACAAATC
    TTATTAAATC ATCCATTCCT GAGCATGTAT GACGACCTGA ATATAGATCT
    TGCTTCGTAC TTCACAACCG ATGGATCTCC GCTTGCCACC TTCAATACAA
    GCAACCGATA TGATGACAGA TAGTCTGATG CAACACTGCG TCATCATCTA
    GCTCGAAGGA TGATCCTTTG GCTGTCCATC TGTAGAATCT ACCATCTACC
    TAACTGGCCC CAAATGTTTC GTGTATTTTT TGGGAGAAAA CTTTGCCCTG
    TGTACTGAGC TGGGATTGAT GTCTTTGATA TGTAAATTTC GCGTAATTTC
    ATATGTAGAA CAATTCTAGG ATCATTGGGC ATTGAAGTTT TGTTTGGCCG
    TGCACCAGGA TGATCTGTTC TTGATCGCTT TACCTTTGTT TCTCACTTCT
    GTAACTAAAA CCTATATTTA CCATTTACCG GATTGTTCAT GGCCTCTTCT
    GGGCAAGTCG GTGTCGACTG AAAGTCTC

    Gene models with high sequence identity

    1. AT4G29810.1 [+] show detail - MAP kinase kinase 2
      E-value: 1e-124; Score: 443.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan TYRKINASE 0.0000000019
    FPrintScan TYRKINASE 0.0000000019
    FPrintScan TYRKINASE 0.0000000019
    HMMPanther MITOGEN ACTIVATED PROTEIN KINASE KINASE, MAPK 8.8e-215
    HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 8.8e-215
    ProfileScan Protein kinase, catalytic domain 45.446
    superfamily Protein kinase-like domain 2.6e-82
    Gene3D no description 1.6e-55
    HMMSmart Serine/threonine-protein kinase domain 6e-81
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.000000000000034
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine/threonine-protein kinase-like domain 1.9e-63

    See the detailed result >

    AT4G29810.1

    Model type
    Protein coding
    Short Description
    MAP kinase kinase 2
    Curator Summary
    encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.
    Computational Description
    MAP kinase kinase 2 (MKK2); FUNCTIONS IN: MAP kinase kinase activity, kinase activity; INVOLVED IN: cold acclimation, MAPKKK cascade, response to salt stress, response to cold, defense response, incompatible interaction; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase/ ERK kinase 1 (TAIR:AT4G26070.3); Has 131554 Blast hits to 129384 proteins in 4297 species: Archae - 179; Bacteria - 15130; Metazoa - 48544; Fungi - 12993; Plants - 32706; Viruses - 527; Other Eukaryotes - 21475 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR