K22810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22810

Determination of introduced cDNA(s)

  • J013112B06 - Rice Full-length cDNAs - Original: J013112B06

    full reading [+] show sequence

    Nucleotide sequence: J013112B06 - full reading 
    GGCGTCTCAG CGATAACCCA AACGATATCG ATGGCGGCGG CGGCGGCGCT 
    AACCGTGCTT CCGCGCGCGG CGGGCGTACT GCGCCTCTCG CAGCATGGGA 
    GGTCTGCCTC CCGCCTACTC TGCGCCGCAG CCGGCGACGG CGAGGCGTCC 
    CCGGCGCCGC GGGCGGGGAG GCTGGTGCTG TACACGAAGC CCGGGTGCTG 
    CCTCTGCGAC GGCCTCAAGG AGAAGCTCCA GGCCGCCTTC CTGCTCGCCG 
    GCACACCCTA CTCGCTCGCC TCCCTCGAGC TCCAGGAGAG GGACATCACG 
    ACGAATCCGG ATTGGGAGCA GATGTACCAG TACGAGATCC CGGTGCTCGC 
    CAAGGTTCTT CCCGACGGCA GCGAGGAAAA GCTTCCCAGA TTATCGCCTC 
    GTCTAAGCGT GGAGCTCGTG CAGAAGAAAG TGTTTTCTGC CTTTGATCAG 
    TAAGATATTT TCACAGTTTC TTTCAGAAGG TGTTTTTTTT TCTTCCAGTT 
    TTGAGTCAGC AGCTATGAGA ATGCCGATGG ATAATGGATG GCATATGTGA 
    TCTTTACTTG TTGTAATCTT TATTAATCTC TATGGGTTTG AGAAATTATA 
    CACTAATTTT TCTGG

    Gene models with high sequence identity

    1. AT4G08280.1 [+] show detail - Thioredoxin superfamily protein
      E-value: 6e-34; Score: 140.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 2.1e-13
    HMMPfam Glutaredoxin 2 4.1e-19

    See the detailed result >

    AT4G08280.1

    Model type
    Protein coding
    Short Description
    Thioredoxin superfamily protein
    Computational Description
    Thioredoxin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin like (InterPro:IPR008554), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR