K22814

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22814

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22814

Determination of introduced cDNA(s)

  • J023108B15 - Rice Full-length cDNAs - Original: J023108B15

    full reading [+] show sequence

    Nucleotide sequence: J023108B15 - full reading
    GGTCTCTCTT CCCCTTCCAC GCCACCTCTC CCCTTCCCAC AGTCCCACGT 
    CGTCGCCGGC GACACGCAGA CGAACGCGCC CGGCAAACCA TGGCGGCGCG
    ATCCGGACCA CCAGCCGCGG CCGTCGACCC CGAGGCCGTG CTCTCCCACA
    GCTTCCCCGA GGTCTCCTTC GCCTACGACG AGAGGGATGT GGCGCTGTAC
    GCGCTCGGAG TCGGGGCGTG CGGCGCGGAC GCCATCGACG AGAAGGAGCT
    GCACCTGGTG TACCACAGGG ACGGCCAGCC ACACATCAAG GCTCTTCCTA
    CTTTTGCTTC TTTATTTCCT TTCAAGAACA GCAATGGGCT TGGAATTGTT
    GATGTGCCTG GCCTTAACTT TGACGCAAGC CTTCTATTGC ATGGTCAACA
    TTACATAGAG ATATACAAGC CAATTCATTC GCGTGCCAAT GTTGTAAACA
    AGACCAAGAT AGCTGGCTTG CATGACAAAG GGAAAGCAAC TATTCTTGAG
    ATTGAGACTA CAACCCATGT CAAAGATTCT GGTGAAGTTT TATGTATGAA
    CAGGAGTACT ATCTACCTGC GTGGTGCTGG AGGCTTTTCT GATCCTTCAC
    GACCATACTC CTATGCTAGT TATCCCACTA ACCAGGTTTC TCGCATTTCT
    ATTCCAAATT CAGCGCCTTC TGCAGTATAT GAAGACCAGA CACAACAATC
    CCAGGCACTA TTGTACAGGT TATCTGGGGA CTATAATCCT TTGCATTCAG
    ACCCTATGGT TGCGCAGGTT GCAGGGTTCA CTCGTCCAAT ACTGCATGGT
    CTCAGTTCCC TTGGATTCGC GATCCGCGCT GTCATCAAAT CTTTCTGCAA
    TGGAGATCCA ACAGCAGTGA AAAGCATCTT TGGCCGTTTT CTTCTGCATG
    TCTATCCTGG AGAAACTTTA GTCACTGAAA TGTGGCTCCA AGGCCAGAGG
    GTGCTTTATC AAACAAAGGT CAAGGAACGC AACCGCGCCG TGCTTTCTGG
    ATATGTGTTG CTCAAACACA TCCCCTCATC ATTGTAAGTG CTGTATCATA
    TTCTTGACTG GATATTTTAT AAATTGGTGC CTGCCTGCTT GTATTAGTTT
    GGTAGTGTGT AGTGGTCAGA AAAGCTAAAG CTTTCCGGGG ACATAAAATC
    AGGTAAATGA AGAGCTTCAG CTACCGCAAG TGGTGGGTTG CCATTGTAAT
    GATAACAAGT GCTCTGCACC TATCTTCAAA TGATACATTG CCTAATTTCT
    CTTCTG

    Gene models with high sequence identity

    1. AT1G76150.1 [+] show detail - enoyl-CoA hydratase 2
      E-value: 6e-109; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.9e-36
    Gene3D no description 6.9e-37
    superfamily Thioesterase/thiol ester dehydrase-isomerase 2.6e-33
    superfamily Thioesterase/thiol ester dehydrase-isomerase 3.7e-25
    HMMPfam MaoC-like dehydratase 1.4e-22

    See the detailed result >

    AT1G76150.1

    Model type
    Protein coding
    Short Description
    enoyl-CoA hydratase 2
    Curator Summary
    Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.
    Computational Description
    enoyl-CoA hydratase 2 (ECH2); FUNCTIONS IN: oxidoreductase activity, 3R-hydroxyacyl-CoA dehydratase activity; INVOLVED IN: fatty acid beta-oxidation, unsaturated, even number, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MaoC-like dehydratase (InterPro:IPR002539), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 2242 Blast hits to 2242 proteins in 541 species: Archae - 23; Bacteria - 1245; Metazoa - 172; Fungi - 395; Plants - 47; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR