K22835

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22835

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22835

Determination of introduced cDNA(s)

  • J033025D11 - Rice Full-length cDNAs - Original: J033025D11

    full reading [+] show sequence

    Nucleotide sequence: J033025D11 - full reading 
    GGGAGTGGAC AAATCTCCGA ACCACAAATT CCAATTCAAA AACTTTTTCC 
    CCGAGTAGCC TCGCCGTCGC CGTCGCCGGA GATGGAGGCG GCGCGGGAGT 
    CAATGGCGGC GCTCGTCGAC GCCGGCCTCT ACGACTGCGC CCAGACGCTC 
    GGGTGCTTTC TTGTGTCTTC ATCACCTGCG AGCAGCGAGG CTGGTATGTC 
    CATGAAGGTG GAAAGCTTGG TACTGCATGG TGATGCTTTG CATGGAGAGA 
    AAGAATTTCG CAGGGCACTG AGTGCCTACA AACAAGCTAT GCAATACAGC 
    AAAAACATTC CTAGGCAAGC AACAAGTAAT ACTAGAAGCT CAGTAACTGC 
    CACTGGCCGG TCTCCTTCTC CAAATTCTTC AAGTCTTGCA CCACTCAATG 
    AAAATGAGGT GAAATTTAAA ATTGCACTTT GCTATTCTGC TCTACGTGAG 
    CATCGTGAAG CACTTCAAGA GATGGAAGGG ATTCCTTCTA AAGCGAGGAC 
    TCTAAAAATG AATCTGATGT TAGGGAAGCT ATATCGGATA TCCAGAAATA 
    ATCGTGCAGC TGCTGTATGT TATAAAGAGT GCCTGAGGCA ATGCCCTTAT 
    GTTTTTGAGG CTATTACAGC TTTGGCTGAA ATGGGGCTTT CTTCAAAGGA 
    GTTCTCTTTG ATATTCTCAC AAGCACCAAA TCGAGGAGGC AAGGCTCCAG 
    GTGACTCTTT AGATGCACAG CGTTGGTGGA ACCGCTATGT TGAGGCCCAA 
    TGTTGCATTG CTTCACATGA TTATAAAGGT GGCCTTGACA TATATCTAGA 
    CTTAATGCAG CGATTCCCGA ACAATGTGCA CATCTTGCTG GAAATTGCTA 
    AGGTTGAAGC CATCATAGGT AGGAATGATG AAGCTATCAT GAACTTTGAA 
    AAGGCTCGGT TAATTGATCC AAACATCATG ACATATATGG ATGAGTATGC 
    AATTCTCCTT AAGTCAAAAT CTGACTACAC AAAGCTTAAC AAGTTGGTAC 
    ATGATATGCT GCATATTGAC CCTGCAAGAC CAGAAACATG TCTTGCTCTT 
    GCAGCATTGT GGGAAAGAAA AGATGAAAGA AAAGCTTTGA CATATGCTGA 
    AAAGAGTCTC CGAGTTGATG ATAGACATAT AACTGGATAT ATCATGAAGG 
    GAAATCTTCA TCTTTTGTTG AATCGACCTG ATTTGGCAGT CACAGACTTC 
    AGGGGAGCTC AAGAACTTAG GGCCGATCTT CGCTCTTATC AAGGATTGGT 
    ACGTGCTTAT CTAGCGCTCT CTAAATGCAA AGATGCATTA TTCACTGCAC 
    GTGAAGCAAT GAAGGTTATG CATCAGTCTG CAAAAGCTCT CAAATTAGTT 
    GGTGATGTGC ATGCTATCAG TTCCAGTGGG AGAGAGAAGG CTAGGAAGTT 
    CTATGAATCC GCCATTCGTC TTGAACCTGG ATTTCTGGGA GCTGCATTGG 
    CTTTGGCTGA TCTGCATGTC GCTGAAGGAC GAAATAAGGA TGCAGTATTG 
    CTGCTTGAAA GATATCTAAG ACAGTGGACA GATGATTCTC TACACATCAA 
    GTTGGCTCAA GTTTTTGCAG CAACGAATAT GCTTTCTGAT GCACTTTCCC 
    ACTACCAATC TGCTCTAAGG ATAAACCCAC ATAATGAGGC CGCAAAGAAA 
    GGATTGGAAC GCTTAGAGAA GCAAATGAAG GGAGTAGACC CGGACGCGCC 
    TGAAGAGGAC GAAGAGAACG AAGCTGACGA TGTCGACGGT GATCAAGACG 
    ACGCTGAACT ACTGTAGAAA AAACCTGATC AACTCACATC AACCCAAGGC 
    ACCACCTCTT ACCAAGCGTC AACTGCGAAA GAGGACCAAA TCTGCAGCCG 
    CTGCCACAGC AGGAGAGCCC CTCAATTGCC ATATATCAAC TAGCAACTTG 
    GAAGGCACGG CAACTGGAAG ACGAGTGACG ACGACGGGTG CCTCTCCCTT 
    ACCGCGAGTA AGTTTTCTTG CTAACGCGAA ACCTCGTCGT AGAGTTGCAA 
    TGCTCACCGT AGGTTTATTT TTCTAATGCT GGGGAAATGT GAACTGAACT 
    TGTTGGTTTC AAGTCAAACT TTATTACTAC CTCTGTCCTA ACATATAGCA 
    ACTTAGTACC CAACAGTCCA AATTCCTGGT ATCTAGGATG TCTCATTTGA 
    TATTAGGGTG CTATATTTTG AGACGGGGTA GTAGTTAATT TGCTCTCCAT 
    GTATTATTGT TTTTTACATT ATTGTGTTAT ATATCATGGC GACAAAAAAG 
    GGGCTGCAAG TCGT

    Gene models with high sequence identity

    1. AT2G39090.1 [+] show detail - tetratricopeptide repeat (TPR)-containing protein
      E-value: 3e-173; Score: 605.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Tetratricopeptide repeat 7.021
    ProfileScan Tetratricopeptide repeat 7.611
    ProfileScan Tetratricopeptide repeat 5.281
    ProfileScan Tetratricopeptide repeat 9.617
    ProfileScan Tetratricopeptide repeat-containing 7.778
    ProfileScan Tetratricopeptide repeat-containing 15.459
    superfamily TPR-like 1.1e-38
    superfamily TPR-like 3.1e-09
    HMMPanther ANAPHASE PROMOTING COMPLEX SUBUNIT 7 3.9e-94
    HMMPanther CELL DIVISION CYCLE 16,23,27 3.9e-94
    Gene3D Tetratricopeptide-like helical 3.8e-13
    Gene3D Tetratricopeptide-like helical 3e-20
    HMMSmart Tetratricopeptide repeat 48
    HMMSmart Tetratricopeptide repeat 60
    HMMSmart Tetratricopeptide repeat 7.1
    HMMSmart Tetratricopeptide repeat 290
    HMMSmart Tetratricopeptide repeat 20
    HMMSmart Tetratricopeptide repeat 190
    HMMSmart Tetratricopeptide repeat 0.14

    See the detailed result >

    AT2G39090.1

    Model type
    Protein coding
    Short Description
    tetratricopeptide repeat (TPR)-containing protein
    Computational Description
    tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: anaphase-promoting complex subunit 8 (TAIR:AT3G48150.1); Has 3516 Blast hits to 3050 proteins in 660 species: Archae - 166; Bacteria - 1649; Metazoa - 603; Fungi - 202; Plants - 185; Viruses - 0; Other Eukaryotes - 711 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR