K22840

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22840

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22840

Determination of introduced cDNA(s)

  • J013045E13 - Rice Full-length cDNAs - Original: J013045E13

    full reading [+] show sequence

    Nucleotide sequence: J013045E13 - full reading
    GGAGCGCGAC CTCGCCGCGC CGCCCATGGT CCTATCCACG CCGCGTCAGG 
    AGGAAGCAGA GAAGCGTCGG CGAGTAGGTC GTCGGCCGGC CGATGGAGGC
    AGCGACGATC CCGAGTCGAA GGTGCAGTAG AGATGGCAAC AGGATGAGGC
    CGAGAGGATG CCGACAGTGA GGTTGACCGG TAGGGGGAGT CAAGATTGTC
    AGGGGAAGCA ATAGCGGTGG CCTTGGGCCT TGGATCCCGG TGGCGAGGTC
    GCGCTCGGCC ATCGAGCCCA CCCCCATGGC GCCCCGGCCA TCGATGGCCG
    GCTCCGAGTT CTCCTACGCG TTCGCAATCG TCGCCGATCC AATCTGTACT
    CTGATGAGAG AAGGGGATAG CGTTGGCACC TTGGCAGCAG CAAAGGAGAG
    GCGCAGTCAA AGAGAGTCAC GCACGCAGTT AGGGGAAGCA GGCAAGGCGA
    GTTGGGAGAA GGAGAGGAGG AGGAGCGAGC AATGGCGGCA GCAGCAGCAG
    CTTTGCCCAC CGCTGCCGCT TTTCCCCACC TCTCCTCCGA TTAATCCCCT
    CCTCCCATTT CTCCGCCTCC CCTACCTACT CGCGCCGCCG CCGCCGCCGC
    CGTCGCATTG GGCGGCAAAC GGCCTGATGG AGCAGTACGA GGAGGAGAAG
    ATTGGAGAGG GCACGTACGG GGTAGTGTAC AAGGCGCGGG ACAAGGTCAC
    CAACGAGACG ATCGCGCTCA AGAAGATCCG GCTTGAGCAG GAGGATGAGG
    GTGTCCCCTC CACCGCCATC CGCGAGATCT CGCTCCTCAA GGAGATGCAT
    CACCGCAACA TCGTCAGGTT ACACGATGTT ATCCACAGTG AGAAGCGCAT
    AGGTCTTGTC TTTGAGTATC TGGATCTGGA CCTGAAGAAG TTCATGGACT
    CTTGTCCAGA GTTTGCAAAA AACCCCACTT TAATTAAGAC TTTGGTTTAG
    CCAGGGCATT TGGAATTCCT GTCCGCACAT TTACTCATGA GGTTGTAACC
    TTGTGGTATA GAGCTCCAGA GATCCTTCTT GGATCAAGGC AGTATTCTAC
    ACCAGTTGAT ATGTGGTCAG TTGGTTGTAT CTTTGCAGAA ATGGTGAACC
    AGAAACCACT GTTCCCTGGT GATTCTGAGA TTGATGAATT ATTTAAGATA
    TTCAGGGTAC TAGGAACTCC AAATGAACAA AGTTGGCCAG GAGTTAGCTC
    ATTACCTGAC TACAAGTCTG CTTTCCCCAA GTGGCAGGCA CAGGCTCTTG
    CAACTATTGT CCCTACTCTT GACCCTGCTG GTTTGGACCT TCTCTCTAAA
    ATGCTTCGGT ACGAGCCAAA CAAAAGGATC ACAGCTAGAC AGGCTCTTGA
    GCATGAGTAC TTCAAGGACC TTGAGATGGT ACAATGACCC TGCTATGGCT
    TTACATTGAA TTGGCTTATG TATGGGCTGG GCTGCTCATT TCATTCCTTG
    TGTGAACGCT GTGCCCTTCG TTTGGGCATT TTTGTCATTC AGCTGGATAT
    ATTTCAAATC TTGTGTGTTT GATATGTATA TTCAGGAACG CTAAATAGAT
    CACCGTCTTG GCCTCG

    Gene models with high sequence identity

    1. AT3G48750.1 [+] show detail - cell division control 2
      E-value: 4e-111; Score: 172.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11295:SF109 1.49999648196318e-63
    Gene3D G3DSA:1.10.510.10 5.59999989416987e-42
    superfamily Protein kinase-like domain 8.30001403791594e-38
    HMMPanther PTHR11295 1.49999648196318e-63
    HMMPfam Serine/threonine-protein kinase-like domain 1.6e-28
    ProfileScan Protein kinase, catalytic domain 0
    Gene3D no description 9.8e-26
    superfamily Protein kinase-like domain 1.5e-24
    HMMPfam Serine/threonine-protein kinase-like domain 2.7e-19
    ProfileScan Protein kinase, catalytic domain 15.072
    HMMSmart Serine/threonine-protein kinase domain 0.001
    PatternScan Protein kinase, ATP binding site 0
    HMMPanther CELL DIVISION CONTROL PROTEIN 2 (P34 PROTEIN 1e-60
    HMMPanther CDC2, MAP KINASE-RELATED 1e-60

    See the detailed result >

    AT3G48750.1

    Model type
    Protein coding
    Short Description
    cell division control 2
    Curator Summary
    A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.
    Computational Description
    cell division control 2 (CDC2); FUNCTIONS IN: protein binding, protein kinase activity, cyclin-dependent protein kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B1;2 (TAIR:AT2G38620.2); Has 126125 Blast hits to 124135 proteins in 4221 species: Archae - 112; Bacteria - 14002; Metazoa - 46757; Fungi - 13170; Plants - 30525; Viruses - 484; Other Eukaryotes - 21075 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR