K22844

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22844

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22844

Determination of introduced cDNA(s)

  • J013100L14 - Rice Full-length cDNAs - Original: J013100L14

    full reading [+] show sequence

    Nucleotide sequence: J013100L14 - full reading 
    TGCCTACGAC ATATGGATGT TTACGCCCAC CCCTTGGAAA ACATCGTTTG 
    AAGATTGTGG AGTTCATCTC AGTTCTGCTG ACAATTGGCA GTGAAACTGC 
    TGAGAAAGAG CTTATCAGGC AATCGGCAAT AAAGCGATCT GTTGATTTAT 
    TCTTCGAGTA CCCATATAAC AATTTTTTGC ACCATCATGT TGAGAATATT 
    ATTGTCTCTT GCCTGGAGGG TAAAAGAACT GAACTTGTTG AGCATGTTCT 
    TAATGACTGT GACATTGTTG GTAAAATTCT TGCCGCGGAA AAACTTTCTT 
    CTTTGTCAAC AGAGTCTACT GGGCCTACTA TACCTTCAGA TGGTAAATCG 
    ATTCCCAAAA TTGGGAATAT TGGTCACATG ACAAGAATAA CCAACAAGCT 
    TATTCAGTTG GGAAGCAGTA ACGGCACAAT CCAGATTCAC TTGCAGGAAA 
    ATAGTGAGTG GGTTGACTGG CAAACAGATG TTCTAGTCAA GCGTAATGAG 
    TGGAGAATGT TTATCATTGG GCTTGTGGGC GCCCAACATC ACTTCATGAC 
    CGTGGTAGGG ATAGTGATGA TGATGACTTC CGAGACAGGG ATTATGATGT 
    GGCAGCTCTT GCTAATAACT TGAGCCAGGC ATTCCGATAT GGGATATATA 
    GCAATGATGA TATGGAAGAG AATCAAGGGA CACTTGAACG GGATGATGAG 
    GATGTCTATT TTGATGATGA ATCAGCAGAG GTCGTAATAT CTTCACTGCG 
    ACTGGGAGAT GATCAGGATG GTTCCCTCTT TACAAATTCG AATTGGTTTA 
    CATTTGATGG AGAGAGAGGT ATTACTGACC GTTTGGCTGC GGTTCCTTCG 
    TCTTCACCTA ATTCAGAGGA GATTTCCCCA GACACTGAGG AAACTGATGA 
    TGGTGAAGTC GTCATTGGTA CTGAGGATCA TATGGATACT GTCAATCTTG 
    GGAATGGTCC TATCGAGGAG GCAGAAGATG CAGCGGAATT TACTAAACAC 
    CCGGCTACTA GCACGGAGGA TGAGCAACTA CAAAACGCTG AAGGGATTGA 
    GCGACACCTG GATGTTTCAA ATGGTGATGC TGAAGCTAGT ACAGAAGCTG 
    CAGAGGCAGC ACCAGTATCT TCAGCCCCAT CTTCTGATGA GGTGCAGACA 
    GAGAGAACTG CAGATGAACC CACTGGCTCA TCTGATTCGG GTAATTCTGT 
    CTCAGAAGTT TTGCCAGATC CTGAAGATAG TAGCATTGAT CCAGCCAACA 
    CAGCAGTATC GTCTGAACAA ACTGTGGATA ACGAAGACGT GGAGTTACCA 
    ACTAAGGAAG TTCCGTCTGT GGATGTTGAA ACTAAAACCG ATGAAATCAA 
    AGCAAATGAG TGAAGGGGCA GGAAATCTCA TGGGCTAAAA TGGCATAGTT 
    GACCAGAACA GTTGTTAGTC AGATCGGTCA GAAAGACAAG CAAGCCTCAC 
    CTGCTCATCA GGCATGGACA TGTCCGAAGC AAACTGCTGT ACAATAAAAA 
    GAGTGTACTA TTTTTGCCAT CCATTGTGGT CTATCCCTGT ACAAAAATGA 
    TCACCATCAT CTAACCGCAC GCTCGTCATC GCAACATCTG AAACTGGTCA 
    AAATTTGTTT CAAGTTCGCC TCCAGTTCAT GGGAAAAATA GGTTGGTGCC 
    AAACGTCATT TGTCAGTTAG TCTCTGTGTC GTGTCTTGAT ATATGGAAAA 
    GAACATTCTT TGGATGGCAG CTAGTTTTGT CAACGTGGTC TTTTGTTTCC 
    TTTTAGGTTT AACACTTTGA ACTGTAATAT GGGATGTGCT ATTTATTTAT 
    AGCCTAGCTA TTATTTGTAA TTT

    Gene models with high sequence identity

    1. AT1G30470.2 [+] show detail - SIT4 phosphatase-associated family protein
      E-value: 1e-108; Score: 171.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIT4 phosphatase-associated protein 4.3e-33
    HMMPfam SIT4 phosphatase-associated protein 2.9e-25

    See the detailed result >

    AT1G30470.2

    Model type
    Protein coding
    Short Description
    SIT4 phosphatase-associated family protein
    Computational Description
    SIT4 phosphatase-associated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT3G45190.1).
    Link
    InterPro Scan - TAIR