K22846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22846

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22846

Determination of introduced cDNA(s)

  • J013082H01 - Rice Full-length cDNAs - Original: J013082H01

    full reading [+] show sequence

    Nucleotide sequence: J013082H01 - full reading 
    GGGAGGCAGA GACAGGATAG GATTATCTCT CCCACACTCG CTCCCCCCAG 
    CCATGGCCAT GGCCGCGGCC GCCTCCCTCC TGCCGGCGAG CGCCGCCCCA 
    ACCCTCCCCG GACGCGCCTT CCGCCCGCCC CGCAACTCCA CCCCGACGGC 
    CTCCCTCTCC TGCGATGGCG GCTCCCGCTG CCGCGGCGTC GGCCTCGGCG 
    TCATCCTCGG TGGGTGTCGC GCGCAAGGCG TTCGACGGAA TGCCGCAGCC 
    GAGACCTACG TCCCAGGCTC CGGCAAGTAC ATCGCCCCGG ACTACCTCGT 
    GAAGAAGGTG ACGGCCAAGG AACTGGAGGA GCTGGTGAGG GGGGAGAGGA 
    AGGTGCCCCT CATCGTGGAT TTCTACGCGA CGTGGTGCGG ACCCTGCGTC 
    CTCATGGCCC AGGACATCGA GATGCTTGCA GTTGAATATG AAAACAATGC 
    CCTGTTTGTG AAGGTGGATA CTGATGATGA ATATGAACTT GCAAGAGATA 
    TGCAGGTAAG AGGACTTCCA ACACTGTATT TCTTCAGTCC AGATCAAAGC 
    AAAGACGCCC TAAGGACTGA GGGACTGATT CCTATTGATA TGATCAGAAA 
    TATCATTGAT AATGAATTGT GATCGCTAGG ATATAGGGAC ATAGTTGAGA 
    TTTTGATGTT TGAAGTATTT TAGCCACTAG TAGATGTGAT AGATTTGAGC 
    TTTCTGATCT TTAGTGGGAA GGTTCTGAAT CTTCTGGTAC GCAGAGTCTG 
    CGTGTGGAAT GTAGTATGTT ATATGTGGGG TTCGTGCTTC AGACTAACAA 
    GCTACTCTAT AATTCAGTT

    Gene models with high sequence identity

    1. AT3G06730.1 [+] show detail - Thioredoxin z
      E-value: 5e-51; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 2e-28
    ProfileScan Thioredoxin-like 13.878
    PatternScan Thioredoxin, conserved site 0
    Gene3D Thioredoxin fold 1.6e-22
    FPrintScan Thioredoxin-like subdomain 0.0000055
    FPrintScan Thioredoxin-like subdomain 0.0000055
    FPrintScan Thioredoxin-like subdomain 0.0000055
    HMMPanther THIOREDOXIN T,DEADHEAD(D.MELANOGASTER)-RELATE 1.3e-25
    HMMPanther Thioredoxin, core 1.3e-25
    HMMPfam Thioredoxin domain 1.9e-21

    See the detailed result >

    AT3G06730.1

    Model type
    Protein coding
    Short Description
    Thioredoxin z
    Curator Summary
    Encodes a plastidial thioredoxin (TRX) isoform that defines a branch of plastidial TRXs lying between x- and y-type TRXs and thus was named TRX z. Possesses disulfide reductase activity in vitro. TRX z was previously named as Trx p (thioredoxin putative and plastidic) before its thioredoxin activity was confirmed (Meng et al., PNAS 2010, 107:3900). Knockout mutant of TRX z has a severe albino phenotype and is inhibited in chloroplast development. Two fructokinase-like proteins (FLN1 and FLN2), members of the pfkB-carbohydrate kinase family, are potential TRX z targets.
    Computational Description
    Thioredoxin z (TRX z); FUNCTIONS IN: protein-disulfide reductase activity, protein disulfide oxidoreductase activity; INVOLVED IN: plastid organization, cell redox homeostasis; LOCATED IN: thylakoid, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y2 (TAIR:AT1G43560.1); Has 15064 Blast hits to 14650 proteins in 2900 species: Archae - 204; Bacteria - 8491; Metazoa - 1613; Fungi - 754; Plants - 1355; Viruses - 0; Other Eukaryotes - 2647 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR