K22849

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22849

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22849

Determination of introduced cDNA(s)

  • J013028D24 - Rice Full-length cDNAs - Original: J013028D24

    full reading [+] show sequence

    Nucleotide sequence: J013028D24 - full reading 
    TCCACGGCTG GCACAGCAGA GTGGATGGCA CCAGAAGTAC TTCGAAACGA 
    ACCATCTGAT GAGAAATGTG ATGTTTTCAG CTACGGGGTT ATATTATGGG 
    AACTTTTCAC ACTACTTCAG CCATGGGAAG GTATGAACCC CATGCAAGTT 
    GTTGGAGCTG TTGGTTTTCA GCAACGTCGC CTTGATATTC CAGCTCATGT 
    GGATCCCACC ATAGCAGAGA TAATAAGGAG ATGCTGGCAA ACAGACCCAA 
    AGATGCGTCC ATCATTTTCA GAGATCATGT CTTCCTTAAA ACCATTATTG 
    AAAAACACGC TTGCCAATCA ACCCCAAAGG CAGCGAGTGC AACGAGCAGA 
    TGGCTAAGAA AATGGAGGTC AACACCAGGC GACAACGTTA AAACAAGGTG 
    CCTTGGTCTT TCATGCCTTC CAGTAACTGC CCACCTGTAA CTATACCATT 
    ATTTTGTATA GCAACATCAA ATGCATGGCT AAGGTGAAAA AGGTGAAGTT 
    CTATTTTTGT CCACCCGTCC GAATACACTG TAAATTTTCC ACAGGCAAAG 
    AAATGCCGAG CTTAGAAAAG CAGCCAACCC ATCAAGCAAA AGAAAAGGTA 
    AAGGAGGGAA AAGGAAAATT TGTGCAAAAC TACTGTACAT TTTTTTTTCT 
    TCCTTGTCAT TTCTTTGGTT CCCAAAGGTT GAGTATTAAT GTGTAAGGCC 
    CAATCAATTG TATTGTTGTT CAACATAAAA GGTCAGTCAT CTTAATCAGC 
    AAGCTTGAAG AAGCCCTCTG GCAGGGCCCC TGTGTATATC ACATTCTGAC 
    AAATTCGTCG GAACTGACAA TTAGATTGCA GGAGAAAAAC CCCTTTTTGT 
    ACC

    Gene models with high sequence identity

    1. AT1G18160.1 [+] show detail - Protein kinase superfamily protein
      E-value: 2e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MAP3K DELTA-1 PROTEIN KINASE 1.4e-70
    HMMPanther SERINE-THREONINE PROTEIN KINASE 1.4e-70
    ProfileScan Protein kinase, catalytic domain 16.344
    superfamily Protein kinase-like domain 8.6e-27
    Gene3D no description 2.3e-25
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.4e-25

    See the detailed result >

    AT1G18160.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1); Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100; Bacteria - 12949; Metazoa - 47184; Fungi - 11113; Plants - 33371; Viruses - 486; Other Eukaryotes - 18556 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR