K22902

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22902

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22902

Determination of introduced cDNA(s)

J013140G07 - Rice Full-length cDNAs - Original: J013140G07

full reading [+] show sequence

GGGTGCCGTC GTTCCCGCAG CCGGCCAGTG CGGCGGCGGC GACGCGGCCA 
ATACCGGGGA GCTACGGCCC GCCGCTGCTC GGCCCGCTCC GCGACCGCCT 
CGACTACTTC TGGTTCCAGG GCCCCGACGA CTTCTTCCGC CGCCGCGCCG 
CCGACCACAA GAGCACCGTG TTCCGCGCCA ACATCCCGCC CACCTTCCCC 
TTCTTCCTCG GCGTCGACCC GCGCGTCGTC GCCGTCGTTG ATGCCGCCGC 
CTTCACCGCG CTCTTCGACC CGGCCCTCGT CGACAAGCGC GACGTCCTCA 
TCGGCCCCTA CGTCCCCAGC CTCGCCTTCA CCCGCGGCAC CCGCGTCGGC 
GTCTACCTCG ACACCCAGGA CCCCGACCAC GCCCGCACCA AGGCCTTCTC 
CATCGACCTC CTCCGCCGCG CCGCCCGCAA CTGGGCCGCC GAGCTCCGCG 
CCGCCGTCGA CGACATGCTC GCCGCCGTCG AGGAAGACCT CAACAGGGCC 
CCTGACCCCG CCGCCGCCTC CGCCAGCTAC CTCATCCCGC TCCAGAAGTG 
CATCTTCCGC TTCCTCTGCA AGGCGCTCGT CGGCGCCGAC CCGGCGGCGG 
ACGGCCTCGT CGACCGCTTC GGCGTGTACA TCCTCGACGT GTGGCTGGCG 
TTGCAGCTGG TGCCGACGCA GAAGGTGGGC GTCATCCCGC AGCCGCTGGA 
GGAGCTCCTG CTCCACTCCT TCCCGCTGCC GTCGTTCGTC GTCAAGCCCG 
GGTACGACCT CCTCTACCGC TTCGTGGAGA AGCACGGCGC CGCCGCCGTG 
TCCATCGCTG AGAAGGAGCA CGGCATCAGC AAGGAGGAGG CCATCAACAA 
CATCCTCTTC GTGCTCGGCT TCAACGCGTT CGGCGGCTTC TCGGTGTTCC 
TGCCGTTCCT GGTCATGGAG GTCGGCAAGC CCGGCCGGGA CGACCTGCGG 
CGGCGGCTGC GGGAGGAGGT GCGCCGCGTG CTGGGCGGCG GCGACGGCGG 
CGAGGCCGGG TTCGCGGCGG TGAGGGAGAT GGCGCTGGTG CGGTCGACGG 
TGTACGAGGT GCTCCGGATG CAGCCGCCGG TGCCGCTGCA GTTCGGGCGG 
GCGCGGCGAG ACTTCGTGCT GCGGTCGCAC GGCGGCGCGG CGTACGAGGT 
GGGCAAGGGC GAGCTGCTGT GCGGGTACCA GCCGCTGGCC ATGCGCGACC 
CGGCGGTGTT CGACCGGCCG GAGGAGTTCG TGCCGGAGAG GTTCCTCGGC 
GACGACGGCG AGGCGCTGCT GCAGTACGTG TACTGGTCCA ACGGGCCGGA 
GACCGGCGAG CCGTCGCCGG GGAACAAACA GTGTGCCGCC AAGGAGGTGG 
TCGTCGCCAC CGCGTGCATG CTCGTCGCCG AGCTTTTCCG GCGGTACGAC 
GACTTCGAAT GCGACGGCAC CTCCTTCACC AAGCTCGACA AGCGGGAGCT 
CACTCCCAGC TAAGCTTTGC TGCCGCCATT CTCTCACTCG ATCTCCATGC 
ACATATGCAT GAAGAAATTA ATTAAATTCA AGTTGCTAGC TCCATTTTTT 
CTCTTTGAGC TGCTGATAAA AAAAACATCT CTATTCTTCT GTGCAATAAG 
CCAATAATTA AGCATTAATC AGAGCGTACA AGTAAAAATT GTTTTC

Gene models with high sequence identity

AT4G15440.1 [+] show detail - hydroperoxide lyase 1
E-value: 5e-98; Score: 355.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Cytochrome P450	1.4e-43
Coil	coiled-coil	0
Gene3D	Cytochrome P450	8.1e-35
FPrintScan	PRICHEXTENSN	1.6e-10
FPrintScan	PRICHEXTENSN	1.6e-10
FPrintScan	PRICHEXTENSN	1.6e-10
FPrintScan	PRICHEXTENSN	1.6e-10
FPrintScan	PRICHEXTENSN	1.6e-10
FPrintScan	Cytochrome P450, E-class, group IV	2e-05
FPrintScan	Cytochrome P450, E-class, group IV	2e-05
FPrintScan	Cytochrome P450, E-class, group IV	2e-05
HMMPanther	Cytochrome P450	2.7e-17
HMMPfam	Cytochrome P450	1.6e-15

See the detailed result >

AT4G15440.1

Model type: Protein coding
Short Description: hydroperoxide lyase 1
Curator Summary: Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.
Computational Description: hydroperoxide lyase 1 (HPL1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, heme binding; INVOLVED IN: fatty acid metabolic process, response to wounding; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group IV (InterPro:IPR002403); BEST Arabidopsis thaliana protein match is: allene oxide synthase (TAIR:AT5G42650.1); Has 6712 Blast hits to 6702 proteins in 615 species: Archae - 25; Bacteria - 392; Metazoa - 3265; Fungi - 548; Plants - 2246; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link: InterPro Scan - TAIR