K22913

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22913

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22913

Determination of introduced cDNA(s)

  • J023016B15 - Rice Full-length cDNAs - Original: J023016B15

    full reading [+] show sequence

    Nucleotide sequence: J023016B15 - full reading 
    GAGAGCAGCA GTCTCGTCTG GAGAAGTGGA CTAGTGGAGT GTCGTGAGTT 
    CTTCGCTTTT GCTTGGCTAA AATCGCCGTT AGAAACTTGT GGAATCGAGC 
    AGCTCGCCGC GCAGCCATGG GTACGCGACG CGTAGGGCTC CTCCTCCTCC 
    TCCTCCTCGC CGCCGTACTG CTCCAGCCCC TCCTCGCGGC GGCGGCGGCG 
    GAGGGCGTGG TCCGCATCGC GCTGAAGAAG CGGCAGGTCG ACGAGACCGG 
    CCGCGTCGGG GGCCACCTCG CCGGGGAGGA TGCCCAGCGG CTCCTCGCGC 
    GGCGCCACGG CTTCCTCACC AACGACGCCG CCAGGGCCGC CTCGAGGAAG 
    GCGAGGGCTG AGGCCGAGGG CGACATCGTG GCGCTGAAGA ACTACCTCAA 
    CGCGCAGTAC TACGGCGAGA TCGCCATCGG CACGCCGCCG CAGATGTTCA 
    CCGTCATCTT CGACACCGGG AGCTCCAACC TCTGGGTGCC TTCCTCCAAG 
    TGCCACCTCT CGATTGCTTG CTACTTCCAC TCGAGGTACA AGGCTGGTCA 
    GTCGAGCACG TATAAGAAGA ATGGAAAACC TGCTTCAATT CATTATGGAA 
    CGGGTGCAAT TTCTGGCTAT TTTAGTCAGG ACAGTGTGAA AGTTGGTGAT 
    GTAGCTGTGA AAAATCAGGA TTTTATTGAA GCTACGCGGG AGCCAAGTAT 
    TACATTCATG GTTGCAAAGT TCGATGGCAT TCTTGGGCTT GGATTTAAGG 
    AAATCTCGGT AGGAAATGCA GTGCCTATCT GGTACAACAT GGTGAGACAA 
    GGTCTTGTTG TTGATCCTGT TTTCTCATTC TGGTTCAACC GGCATGCTGA 
    TGAAGGGCAG GGAGGCGAAA TTGTGTTTGG AGGGATTGAT CCTAATCACT 
    ACAAGGGAAA TCATACATAT GTCCCTGTCA CTAGGAAGGG ATACTGGCAG 
    TTCAATATGG GCGATGTCCT AATTGGAGGG AATTCCACAG GATTCTGTGC 
    AGCTGGGTGT GCAGCAATAG CAGATTCTGG AACTTCACTG CTTACTGGTC 
    CCACGGCCAT AATTACTCAG ATAAATGAAA AGATTGGTGC TACTGGGGTA 
    GTCAGTCAAG AGTGCAAGGC AGTTGTTTCT CAATATGGTC AACAGATCCT 
    AGATCAGCTG CGAGCAGAGA CAAAACCAGC GAAAGTATGC TCTTCGGTCG 
    GTTTATGTAC TTTTGATGGT ACTCATGGTG TTAGTGCTGG TATTCGGAGT 
    GTGGTGGATG ATGAAGTTGG AAAATCAAGT GGTCCCTTTA GCAGTGCGAT 
    GTGCAATGCT TGTGAGACAG CTGTTGTATG GATGCATACC CAACTTGCAC 
    AAAATCAAAC TCAGGATCTC GTATTGCAGT ACATTGATCA GCTATGTGAC 
    CGTCTTCCTA GTCCTATGGG AGAATCATCT GTTGACTGCA GCAGCCTTGC 
    ATCCATGCCT GACATTGCCT TCACAATCGG TGGCAACAAG TTTGTTCTCA 
    AACCAGAACA ATACATCCTG AAGGTTGGTG AGGGAACTGC TACCCAGTGC 
    ATCAGTGGAT TCACAGCTAT GGACATTCCT CCTCCTCGTG GTCCTCTCTG 
    GATCTTGGGA GATGTCTTTA TGGGAGCCTA CCATACCGTG TTTGACTATG 
    GCAACCTGAA GGTTGGCTTC GCAGAGGCGG CATAATGCCC CCCATGGTGA 
    TCGGACGAGT CGGAGAGCCC TTAGCTTTTC AGCTCGGGTT TATCTCCCGC 
    AAGCGTGTAG GTATATATTT TAGTGCATGC TCAATAAATA TTGCTACTGT 
    GATCTCAAAA CCTGTCTGTT TTAATTTGGC TAAGCTAAAT ATAAGTAGGC 
    AGAATTCAGA CG

    Gene models with high sequence identity

    1. AT1G11910.1 [+] show detail - aspartic proteinase A1
      E-value: 0; Score: 687.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Peptidase aspartic 9.3e-126
    superfamily Saposin-like 6.4e-26
    ProfileScan Saposin B 12.357
    ProfileScan Saposin B 11.982
    Gene3D Peptidase aspartic, catalytic 2.3e-83
    Gene3D Peptidase aspartic, catalytic 1.6e-21
    PatternScan Peptidase aspartic, active site 0
    PatternScan Peptidase aspartic, active site 0
    HMMPanther ASPARTIC PROTEINASE-RELATED 2.3e-242
    HMMPanther Peptidase A1 2.3e-242
    HMMPfam Peptidase A1 2.5e-130
    HMMPfam Saposin-like type B, 1 6.8e-13
    HMMPfam Saposin-like type B, 2 1.4e-11
    FPrintScan Peptidase A1 4e-29
    FPrintScan Peptidase A1 4e-29
    FPrintScan Peptidase A1 4e-29
    FPrintScan Peptidase A1 4e-29

    See the detailed result >

    AT1G11910.1

    Model type
    Protein coding
    Short Description
    aspartic proteinase A1
    Curator Summary
    Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
    Computational Description
    aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR