K22930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22930

Determination of introduced cDNA(s)

  • J033126A18 - Rice Full-length cDNAs - Original: J033126A18

    full reading [+] show sequence

    Nucleotide sequence: J033126A18 - full reading 
    GTCCCTAACA ACAGAACCGC CGCCGCCACG GAACCCACCC ACGCCGGAAT 
    GTCGCCGGCG GAGCCCCGGC CGCCCGCCGC CGCCACCCGC AAGCGGAAGA 
    AGCCGCACAA ACCCACCAAA ACCCTCGCCA AGAACCCCAC CAATCCCGTC 
    TCCACGAAGG CGAAGAAGAA GAAACCGCCG CCGCCCTCCA AGGCGGACCA 
    ATCCGCCTCC GCCGCCGCCG CCGGTGGCGT CCTCCTGTCG GCCGAGATGC 
    CCCCTGCGCG GCAGCTCGAG TTCCTCCTCC GCAGCTTCGA GCGCGCCGCC 
    AAGATGCGCC TCTCCCCGCT CGAGCTCGAC GCCTACTCCG AGGGATGCAT 
    GGTGCCGCTC GCGGAGGGGG CGAGCCAGGA CGTGGAGGGA TTCGGTGACC 
    ATGTGAAAGG GGCCTTTGGC TCCTCTTGGA AGGAGGAGCT TTGTGAGGGG 
    GAGCTCGATG GCGGCGCCGT GGACGCGGGC AGCCCGGCGC TCCTGGTTAT 
    CTGCTCAGCT GCTCTGAGAT CGTTGGAGCT TCTTAGGGGT TTAAAGATGT 
    TTACTAAAGA GTGCCGCCCT ATTAAGCTCT TTGCTAAGCA CATGAAAGTG 
    GAGGAGCAGG TTGCGTTGCT TAAAACTCGA GTTAATATTG CTTGCGGTAC 
    ACCAAGCAGG ATCAAGAAGC TAATTGACAT GGAAGCATTA TCTCTGTCAC 
    GGGTGAAACT AGTTGTACTT GACATGCAGA GAGATGCAAA GTCATTTACC 
    TTATTCACGT TGCCACAAGT CAGCAACGAG TTCTGGGACT TATACAAGGG 
    CTATCTCGAT CAGAAAGTTC GAGGAGGAGA TACAAGATTA TGTTTTTATG 
    GTGCTGTCTC TGAGAAAGAT GTGAAAAAAG CCCTTCCATC TGCGGAGTAA 
    AAATGGCTGA TACGATGAAT TTGTGTCATG TGCACATTGT AGTCAATGTA 
    CTAGATATGT ATTTTTGACA TACTAGAAGT TTGTAGAAGC AGGCTGGGCA 
    AGAAAATTTT GGAATTTTGA GTGC

    Gene models with high sequence identity

    1. AT2G43110.1 [+] show detail - unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Meta...
      E-value: 3e-60; Score: 229.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 0.000071
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 0.00025

    See the detailed result >

    AT2G43110.1

    Model type
    Protein coding
    Computational Description
    unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR