K22947

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22947

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22947

Determination of introduced cDNA(s)

  • J013052G16 - Rice Full-length cDNAs - Original: J013052G16

    full reading [+] show sequence

    Nucleotide sequence: J013052G16 - full reading 
    GAACCAACCA ACCAGCCCCG CCTCGAGCCA AGCAAAACCC TAGCAAAGGG 
    GAGGGGCAGC GCCGGCGGGG GCGACGGGGC GTGGGGGCGA CGGTGGGCCA 
    TGGACGCGAT CCGGAAGCAG CTCGACCAGC TCATGGGCGC CAACCGCAAC 
    GGCGACGTGC GGGAGGTCAG CCGCAAGTAC TACGACCGCG ACGTCTGCCG 
    CCTCTTCCTC GCCGGCCTCT GCCCCCACGA CCTGTTCCAG CTCACCAAGA 
    TGGACATGGG GCCATGCCCG AAGATGCACT CGCTGCAGCT GCGCAAGGAA 
    TATGAAGAAG CGAAAGCCAA AGGTATGGAC AATTATGACC GTGAATTGGA 
    AGAAACTATA GAAAGACTAA TATCGGAGTG TGAAAGGAAG ATTCAGAGAG 
    CCCTTAAACG TCTAGAGGAG GACGATGCCA AGGCAGCTAT AGCAATTTCC 
    ATCACTGAAG TCACACAGAG TAAAGAAGTG ATTGAGTTCT CCAAACAAAT 
    CAAGGAGAAG ATGAAGGAGA TTGATGCTTT TGATCTTGAG GGAAACACTG 
    AGGGCAAAAT TCGGGCTACT GAAGAGGTTG ACAAGCTCAA GGAACAGAGG 
    GCTGAAGAGC AGGCAAAGCA TCTACTTGAA GCTTTTAATA AGGACCGTGT 
    CTCACTAATG ACTTCACTCC AAACTGCTAA TCAATCAATT CCACCACCAC 
    CTGTTGCTGC TGCTCCAGAT GCACGCACAC AAGAAATGAT TGATGAAAAA 
    CTCAAAAAGG CAGAAGAACT AGGTGAGAAT GGAATGATCG ATGAAGCTCA 
    GAAACTTTTG GATGAAGCAG AAGCTCTAAA GAAGCTTGGT GCTCGGCCAC 
    AGCCTGTTCC GGACTCTGCA AAGATGTCAA CTCACGTTCA GATTACTGAT 
    CAAAAGTTGC GCCTGTGTGA CATATGTGGA GCATTCTTGA GCGTATATGA 
    CAGTGACCGG CGTTTGGCAG ATCATTTTGG AGGGAAACTT CATATGGGTT 
    ATATGCTGAT ACGTGAGAAG TTATCCGAAC TGCAGGAAGA GAAAAACAAA 
    AGGCGCAAGA TAGACCGAGC TGAGCATGAG AGAAGGTCCA GGGACAGGAG 
    CCTGGAACGT GACAGAGCAT CTAGCAAGGA TCGCCATAGA GGAGATCGAG 
    GCAGCAGCCG TGATAGGGAC AGGGATTATG ACCGCAGGAG AAGCCATGAT 
    CGATACCATG ACAGAGAAAG TAGGTCGGAC AAGGACAGAG AATCAGGGAG 
    ATCCCATAGT TATGATTCAA GGGGCTACCG AAGGTCACGC TCCCCTAGGG 
    ACCGTTCCAG AGACTATGAT CGATACGGGC GTGACGACCG TCGGCATCGA 
    CGCTAGACAC ATGGTCGAGG GTTTTAGCAT GAACCGGATC GTTTGGTGTT 
    TCAATTCAGA GGTTCATGTG GGAAAGATGC TTATTTCCTG AGTATATCCA 
    TTTGCACTAC CACCAATGAA CATGGAACTG ATGTAATAGC TACGTGAAGT 
    TAGGATTCTA GTTGATGCTG ATCATGTACA ACCAAAATTG TGTTAAAGAG 
    TTGTGGTATG TCTCAGATCA TCCAAATTTA AATTTGAAGA TATCCTCTCC 
    TCTTGAAACC C

    Gene models with high sequence identity

    1. AT5G17440.1 [+] show detail - LUC7 related protein
      E-value: 2e-118; Score: 423.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther UNCHARACTERIZED 5.3e-223
    HMMPanther LUC7 related 5.3e-223
    HMMPfam LUC7 related 2.4e-47
    HMMPfam LUC7 related 3.7e-40

    See the detailed result >

    AT5G17440.1

    Model type
    Protein coding
    Short Description
    LUC7 related protein
    Computational Description
    LUC7 related protein; CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT3G03340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR