K22949

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22949

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22949

Determination of introduced cDNA(s)

J023078D12 - Rice Full-length cDNAs - Original: J023078D12

full reading [+] show sequence

GGCTCGATCA CCACCACCAC CTCTCGCTCA TCCCAATCCC CATCACGAGC 
GCCCCAGAAT CCCTCCCCTC CCTCGTGCAC CGCCTCCCGT CCCATCCAGC 
TCCTTCTTCT TGGCGGGCGA GAGATCGATC GAGCTGGCTG CGTGTGAGCG 
AGTTGCCACG AGCGGCCAAG AGATTAACGG AGGGGGCGGA CCAGCGGAGC 
GAGGTCGTTG AGGGGATATG GAGCGGTACG AGGTGATGAG GGACATCGGG 
TCCGGGAACT TCGGGGTGGC CAAGCTCGTC CGCGACGTCG CCACCAACCA 
CCTCTTCGCC GTCAAGTTCA TCGAGAGGGG ACTCAAGATT GATGAACATG 
TTCAAAGGGA GATTATGAAC CACCGATCAC TGAAGCATCC AAACATAATC 
CGGTTCAAGG AGGTCGTGCT AACTCCCACA CATTTGGCAA TAGTTATGGA 
ATATGCTGCT GGTGGTGAGC TATTTGAAAG GATTTGCAAC GCAGGGAGAT 
TCAGTGAGGA TGAGGCAAGG TTCTTCTTCC AACAGCTGAT TTCTGGAGTG 
AGCTATTGTC ATTCTATGCA AGTATGCCAT AGAGATTTGA AACTCGAAAA 
TACTCTCTTG GATGGCAGTG TCACACCTCG GCTTAAGATT TGTGATTTTG 
GTTACTCCAA GTCTTCTGTC CTGCACTCTC AACCGAAATC AACTGTTGGC 
ACCAGTCCGG ATCCTTGTTT TCTTACAGTG ATTTTCGTCT CCATGCTTGT 
GAATTCTTTA AAATTATATG CCAGAGGAAA CGGCCTTTGG ATGTCGCGAT 
TGTGGAGTAT GATGCAGCAA TGAGCAACAT TTTCCAGTTG TTGATGAACA 
TTGCACAAGA TTTTTTAGTG AGATCCAAGA TGCAGCCCAA CGTTATTGAT 
GTTAATGAAT ACGAGTTTGC AATGTGTATT TGTGAGACAA TGGTTGCTCT 
CGGTTCTTCT AATATGCAGT GCATACTAGC TGATGTAGCA AGGACTTTGC 
ACTTCCTACA ACAGATGCTG GAATATTATC AACACTACAA GATCACGCTT 
CATTTCCAAT CTTTATTATT TTGGCTGGTG GTCTTGAGAG AACCATCAAA 
AGCTAAGTCT GTTGCACGTG TTTCTAGTGA CACCCCTGCT GCCGGTAATT 
CTGCATCTAC TGGTGGTGGT TCAACTGAAA GGGAGAAGAA AGGGGTGTCA 
GTATTAATCA CTGATGAAAT GTACAGTACA ATTTTGGATG TTACGTTCAA 
AAGAATGCTT AAAAAAAGTA CGAGTGCATC TTCAGGGCTG TTAGAACTAT 
GGAGTGAAGA GCTAGAGGGG AAGAGTGACT TCTGCAACTA CCGTGCCAAG 
CTGCTGGATC TCATAAAAGT CATTGCATCT CAAAGGCCTG GTATTACAGC 
AACAAGCATT GTACGGAGAA TAAACATTGT ATTTGGAGAT GCTAATGAAG 
CAACGAAATC ATCCCAGGAT CTTGATGCAA TGGAAGGTGC GCAGCTGGGG 
CTGGAAGCAG TTGTTAGTGC TATATTCGAT GGCTCATCTG ATTATTCAAA 
GATTGACCAG GACACAAAAT TCCAAATTCA CAGGATCTTT GAAGGCTTAC 
TTCAGCAGCT TCTTTCTTTA AAGTGGTCAC AACCAAATCT TGCTGTTATT 
CATGGTCACT ATTTGGATTC TTTGGGTCCT TTCTTGAGAC ATTACCCAGA 
TGCAGTTGCC TGTATTGTGA ATAAGCTTTT TGAAATATTA ACATCTCTCC 
CCATCACAAT TCAGGACCCT TCAAATAATT TCCGTCAAGC TAGACTGCAG 
ATCTGCTCAT CATTCATTCG TATATCAAGA GCTGCTGATA AAGCACTTCT 
GCCTCACATG AAGAACATTG CTGATACAAT GGCTTATCTT CAAGGAGAGG 
GTCGCTTACT ACGTGCTGAG CATAACCACC TCTGTGAAGC GTTTCTTGTC 
ATGGCATCCT CTGCAGGGAT TCAACAGCAA CAGGAAGTCC TGGCTTGGTT 
ACTAGAACCT ATCAACAAAA TGTGGACGCA AGTGGAATGG CAAAATGCAT 
ACTTGTCTGA CCCATCTGGC TTGACACACA TGTTTGCTGA CAGCCAATTT 
ATGTGGTCAA TTTATCACAA CATCACATTA TTTGAGAAGG CACTCAAGAG 
GGGTGGGTCC AAAAAATCTG CATCAGCTCC ACAAGCACTG GCCACAACAG 
TGGTAACTGC TAATCTGCAT CCAATGTGTT CACATCTACC ATGGATTCTG 
CCCCCTCTGT TAAGGCTGTT GCGATGCATA CATATGCTTT GGGCCGAGCC 
CTTTTCTCAG TCTCTGGCAG GAGAAGTCAA AGCGGCAAAA AGCATGACTG 
TGGCGGAGCA GACCAGCCTT CTTGGGGAGA CAAATAAACT CACCAAAGGC 
CAGGTTGCAT CTGCTGATGG ATTGTTGGAT GTTCAAAGGG AGGGAGAGTC 
TAAGGAAAAC ACCATAAGGA ACTGGTTACG CGGGATCCGT GACAGTGGGT 
ACAATGTTAT AGGACTATCG GCTAGTCTTG GGGATCCATT TTTCCGATGC 
ATAGAGGGTT CCTCCATCAC TGCTGCTCTT ATGGAGAACG TGCAAGCTAT 
GGAATTTCGG CATTTGCGCC AACTTATCCA CCTTGTTATT ATTCCTTTGG 
TTAAATATTG CCCTCCTGAA CTGTGGCGGA TGTGGATATC GAACCTTTTA 
CAGCCATTAT TTGTCCATTG TCAGCAAGCT CTTGATTTCT CTTGGTCCAG 
TCTTCTTCGT GAGGGCCGGG CTAAGGTTCC TGATAATTTT GGTAATCTTT 
CTGGGTCAGA TCTGAAGGTA GAGGTAATGG AAGAGAAATT GCTTAGAGAC 
TTGACTCGTG AAGTATGTTC CGTTCTTTGG GTTTTAGCAT CACCAGGCTT 
GAATAGTGGT CTTCCATCCT TAGAACAACT TGGACCTGCC AACCGGATTA 
ATTCTTCTCT TAAGGATCTG GAGTTGTTTG TTTCCAGCTC TATCACTGGA 
TTTCTTATGC TTAATGTCTC CACTGCTGTT CCTGCATTGA GGATAACTGT 
TGAAGTGTTC AGTTGGACAG ATAGTGAAGC AGTCACAAAA ATTATTCCTT 
TTTGTGGTGC ATTGATTCAC CTTGCTGTTG CAACAAATCG GGCTGAGTTG 
AGTCAGTTTG TTGCGAAAGA TCTATTTTCT TCCATATTAC ATGGCTTATC 
TGTTGAGTTG AATTCCATTA CGAGTTCAGA ACTTGTTGGA CTTTGTCGAG 
AAATATATAT CTATCTCTCA GATAGAGATC CCGCACCTAG ACAGGTTCTT 
CTGTCCCTCC CACACATGAA GCAGGAAGAT TTGCTAGCCT TTGATGAGTC 
TTTGAGCAAA ACTGCAAGTC CAAAAGATCA AAAGCTACTT ATGCGAAGCT 
TACTTTTGCT TGCTTCAGGG AACAAATTGA GAGCTCTTGT TGGTCAAAAG 
GCTACTAATG TTATTACCAA CGTTACAACT CGAAACCGGA GCTCTGCTGC 
ACGCCATGGA CTTAGTGCTG AGGAAGATGA CCAGATTGGA TTAGCTGCAC 
TATCATCATA GAACTGACCA GCTAAAGTTG TTTTCTGTAC AGAAGGGTAA 
TGACCCTATA GATTGGTAAT GTGGTGGCAA ATTTAAAGGC GAATATCATA 
TCCTTGCTGC ATTGTCAAAT AGGAACGTAT GCATGGTTGA GTTTATACAC 
AAGGTGCCAT CATGAGCAAA AGAGAAAAAA AGCTTGATTA CAGCTTCTTT 
CCCCATAACA TTGTATATGC CCTTGTGCAT AGCGCTTCTA TGCAGTATGT 
GCAGAACAGT GGAATGTACA TGTATTACTG ATTTGCTCCT ACCGACCACG 
TTTTGCCGTG GTTTAAAGAA GGAATTGCCC C

Gene models with high sequence identity

AT3G05040.1 [+] show detail - ARM repeat superfamily protein
E-value: 0; Score: 902.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Protein kinase-like domain	2.9e-49
HMMPfam	Serine/threonine-protein kinase-like domain	1.3e-43
Gene3D	no description	1.6e-37
PatternScan	Protein kinase, ATP binding site	0
PatternScan	Serine/threonine-protein kinase, active site	0
HMMSmart	Serine/threonine-protein kinase domain	7.1e-35
HMMSmart	Tyrosine-protein kinase, catalytic domain	2.8e-06
ProfileScan	Protein kinase, catalytic domain	30.605
HMMPanther	Serine/threonine-protein kinase-like, plant	1.5e-104
HMMPanther	Calcium/calmodulin-dependent protein kinase-like	1.5e-104

See the detailed result >

AT3G05040.1

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Curator Summary: Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.
Computational Description: HASTY (HST); CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 520 Blast hits to 417 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 183; Plants - 102; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link: InterPro Scan - TAIR