K22950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K22950

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K22950

Determination of introduced cDNA(s)

  • J033035N15 - Rice Full-length cDNAs - Original: J033035N15

    full reading [+] show sequence

    Nucleotide sequence: J033035N15 - full reading
    GGAAGAGGCA AACCAAACCA AACCCAACCC CTCCTCCGCC GCGGCCCGAA 
    ACCCCACCGG ATCGGCGGCG GCGGCGGCGG CAGGAGGCCG GCGGGCGGAG
    GAGATGTCGC TGACGGAGGT CAGGATCGGG GAGGAGGTGT GGCTCACCTG
    CCTCTCCCAC GCCCTCACCA CCGAGACGGA GGAGGTCATG GGCCTCCTCT
    TCGGCGACAT CAAGCATTCG AGCAGGGGCG GGGTGACTGC TCTGATATGG
    GGGGCGTCGC CGCAGATGAG GTGCGAGCGG AAGAAGGACA GGGTGGAGGT
    CAACCCCGAG CTGCTCGCGG CGGCGACGGC GCAGGCCGAG AGCTTGTCGG
    CCACCATCGG CGAGAAAACG AGGGTGATTG GATGGTACCA CTCGCACCCG
    CATATCACCG TTCTGCCTTC CCATGTAGAT GTTCGGACCC AGGCAATGTT
    TCAGTTGATG GAGCCAGGTT TTGTGGGTCT GATATTCTCT TGTTTTAGCG
    AAGATGCTCA AAAGGTTGGA AAAATCCAAG TGATTGCTTT TCAGTCACTT
    GGTGGAAATC AGCAATCTGT TGTTCCTGTT AATGATCCAG TCATTAACCT
    TGAATCATCT TGGAGTTCGT TGGATGATAC CTCACATCCG GCATTGATTG
    AAGGCATTGA ACAAGACACG GGGGATTCTA AATCTTCAAG AAATAGCAAG
    GTGTGGGCAA AATCTTCTGA TGTGGATTTC TATCCTCATT TTGACGCCAA
    TCACTCAGCA AAACATCAAT CCAAAGAAAA TGCTATAGTT GCATACGATC
    CCAATAATGC ACCTGAGACC CCTGTTGATC TAGATGAATC AGATATGACC
    CCAAGCATCC AGGAGGCGTT GCACAGGTCA AACATGGACA TTAGTGGTGC
    AGAATATGTA AGAAAGGAGG TGCCACTTTA TGTATTTCCG ACCAGGCATC
    TGCTAAAGCT GGACACCACA TTAACTTCTT ACTGTGATAT GCAACATGTC
    GTTTTCGAAG AGGAAAAATC AGCATATAAT CAAGCCATGC ATCAAAATAT
    TCGTGATGGG AAGATCCACC CACTTACATC TATTCACCAT GCATCTACAT
    ACAACTCATC TCTCTGCAAA TTAATGGAAT ACTGTTTGAG CCCTGCTATA
    ACTGTACTTC AGGATCGTCT GAAGGAAAAT GAACTTCGGT TATCTATGCT
    AATGGAGGAG GCTAAACAAC TTGAGGCAGA GAACCAGAGC ATGAGAAATG
    ATTCTCCTCG TCGCTTGATG TATCATGGGA CTAGTGGCAC CAGTTCTCTG
    ATGGCACAGG ATAAGCAAAT GAGCCCCAGA AGTCCTAGCG GCACCGGCCG
    GAGAAAGGCT TCCTGATTTC AATCTTGTTC ACTTGACATG GTGAATATCG
    TGAGCTGCGG TTCCACCCCT TGCTATCTGC AATCCCCATT TTTCCGGTGT
    ATGAAGGTGT GTACAGTGGC TTTGTACATA CCTCAACTCC TCAGCACCAG
    TGCTGTTGTA AAAGTTACTG CGGCCTCCCT TGGCTTTGTA CTGCTGTTCC
    TCGCGCTGCT GCTTAATTTG CGCCAAATCC CTTTCCCTTC CGAGGGCTTA
    TTCCATGAGC TTGTAGTTTG TGCTGGGGTG GTTGCTTTCT TTGAGCTATT
    GCTAATTAAG ATGCAATGCA TTTCCCGTGC AGGCAAAGAC GAAGCTTGTT
    TTTGCTTTGC TGTTGGAACA GATCATGTAC TATTACCAAT CCAAAAGCTG
    AAATGCTCAG GCACACTTGC TGCCAAAGTG TCG

    Gene models with high sequence identity

    1. AT1G80210.1 [+] show detail - Mov34/MPN/PAD-1 family protein
      E-value: 4e-110; Score: 395.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mov34/MPN/PAD-1 1.7e-24
    Coil coiled-coil 0
    HMMSmart Mov34/MPN/PAD-1 4.5e-12
    superfamily JAB1/MPN domain 1e-16
    HMMPanther C6.1A 7.8e-128
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -R 7.8e-128

    See the detailed result >

    AT1G80210.1

    Model type
    Protein coding
    Short Description
    Mov34/MPN/PAD-1 family protein
    Computational Description
    Mov34/MPN/PAD-1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G06820.2); Has 1011 Blast hits to 924 proteins in 229 species: Archae - 0; Bacteria - 3; Metazoa - 473; Fungi - 224; Plants - 189; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR