K22951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K22951

Determination of introduced cDNA(s)

J013042E12 - Rice Full-length cDNAs - Original: J013042E12

full reading [+] show sequence

GAAACAGACC CCTAATCTCG TCCTAGCTCC AAATTGAACG AGCCACGACC 
CGTCCGAGAG GTGTATCGTC GGCGGCGACT TCATCCGTGG GCAGATCGAC 
CTCCACAAGC TTCGCGGCGA GGTCTAGTCT AGACGAGGTC GGCATCAACT 
TCATCGGTGG CCGTGCTTCC CCCTTCATCC CCTCTGCTTG GACGGGGATC 
CACCGGCCAG ATCCGGCGCA TCTTCAGGCC AAGGGTGAGC TCGTCGCCCT 
CCCCTCTTGG GCCAACGTGG ATTCCCGGTG ACTGGATCCG ATTCATTCAG 
TAAAATAATT GGAGGAATCC CTCCAAACGG ATCCGATTTC TCCCTGCCAT 
GTCGCCCTTG GGACCTTGTG CAAGCCCCAG CTGGTCCGAC CTCTATTGAT 
CTCCTCCTAA TCATCCTGGA ACGACTGGAG CTTCCTCATG CACTTGCCTT 
CGCCGCAGTC TGCACTACAT GGAGTTCCGC CGCCACGGCT GCCGGTGTCC 
CACGTTCTCG CACTCCATGG ATCATGTCTT GGGGTAACCA CGTTGATAAA 
AGGCTGGACG AAAGGCGCCG CTCGGCGGTG ACCTGCAACC TCTACCACCC 
TGATGATGCA GTCGACAAGA TCTATAGTGT CAGTTTTCCA AAGGGCTCCT 
TTGTTGCGTG CTACGGGGCC TCTCACGGCT GGCTGGTTTT GGCGAATGAT 
CTCTCCAATC TCGTGCTTCA CAACCCTGTC ACACTGGCCA TGATCCCCCT 
CCCACCGATC ACCGATTTCG CTTGCGTGGA GGCGGTCTAT GGCAGCGAAG 
AAGGGAACTT GGAACACTAC CTTTTGGAAA CAAACAGCAG GTTTGAAGCA 
TATCGGTTAG GGATATGGTT CTACCAAAAG GCAGTGCTGT CTTGCAGTCC 
ATCCAGAGGC GGTGACTACG TCGTGATGAT CATCCACAAC AACGGCGAGT 
GGCTTTCTTT CGTCAGGGCA GGACAGAGCA AGTGGCAGGT GGCTTCAACT 
CTAAGTGGGG GAGACAGATA TCTCGACTGC GCGTACCACA AAGGGAGGTT 
CCACGCCGTG ACATTGCACG GGATGGTGGA GAAGTGGGAT CTTGATGGAG 
CGAGCAATGG ACCAACAAGG GAGGTTTTTT ATGCCGCAAG GCCCTACGGA 
GGATTAGGAT TAATCCTCAC TCGGCATCTA GTGTCGACGC CATGGGGTGA 
TCTCCTGCAA GTTCGTGCGA TTCTCGCGCA TCACTACCCA GATGGTATAG 
CATTCCAAAT CTGCAAAGTT GATCCGGATG GATGCAAGGG GGTGGTGCAG 
GAGAATGTTT TGATGGATCA TGCACTATTC CTTGGATTGA ATCACTCCGC 
ATGCTTACCC ACCCAGAATT TGCCCGGGAT ACGACCTCAC TGTATATATT 
TCTCTTCTCC CGTGATAATA CATGCATTCG ATTGGCTTCT TGGACTACGT 
GTTTGGGGAG GTGTAAGGAC GTACGACCTG GAAACAGGAA AATTCGAGCG 
TGCAGTTCCC TTTTGTGATG TTAAAGAACA GATCTACGGG TTATTTCCAT 
CTGAGGTTTG GATCACTCAG AATTTGCAAT AATTAGAAAA CAAGATTGTT 
ATCTGTTTAG AAGCATGTCT ATGGACATTA TAGTTAGGTA CTCACTATCA 
GTTTTAAGCT TGTATCGATC ATTTTTATGG TACCCTACTT CAAGATTCGG 
AACATTGAGA TCGATATTCA TGTGTTGATG GCGGTGTACA AATCTGTTTC 
TGATTGTATT TGTTGTGGCA GTGATGTCAG ATTTGTTTTG TGGTGGGAGA 
TTGCTGGTGA TTGCTTTTGT GATGGCAGGA TGTACTCT

Gene models with high sequence identity

AT4G17565.1 [+] show detail - F-box family protein with a domain of unknown function (DUF295)
E-value: 0.0000000004; Score: 22.70

InterPro Scan Digest

See the detailed result >

AT4G17565.1

Model type: Protein coding
Short Description: F-box family protein with a domain of unknown function (DUF295)
Computational Description: CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT2G05970.1); Has 496 Blast hits to 483 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 496; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR