K23012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23012

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23012

Determination of introduced cDNA(s)

  • J033125M22 - Rice Full-length cDNAs - Original: J033125M22

    full reading [+] show sequence

    Nucleotide sequence: J033125M22 - full reading 
    GAGGAGAACG AGAGAAAACG CACCGTTGGC CGCGTATCAG GGATTCGGGG 
    CATCAAGGTC CAATAGCTGA ATAGCACATC GCCATCACAA TGCCAGCGCC 
    TCTCCCAGGT GTCGGAACCG GAGAGAGGGA GAGATAGAGA GACCTGGAAG 
    GCTGGAAATC GAGAGCAGCG AGGCGGCGAA ACAAGCAGGC GGCCCGGCTC 
    TCAGTCTCAT CCCGTGCCTC CTCCGCCTCC CTAATCGTCA ACCATCTAGA 
    TGTCTCAGTC GGTGCAAGGG TCTTTTTGTT AGTTACTTTG CAAAGTTAAA 
    CTTGAAAATT TAAAGGATAA AAAAATGTCC AGGACTGCAA TAATTTTGCA 
    TCGATTTCGT CAAGCAGCTG CCAGTCAGAG CCTCGTAGAG ACTTCTCTTC 
    AGTCATGCCC ATATTTTGGT GTTCCTCTGA GATGGTTAAG CTGCACAGAG 
    CAAACTTCAA AATGGGAAAC TTCTACATCT TATCAGATTG ATGACGTAGA 
    TCAATATTCA CCAATTAGTA GTGTAGCAAA AATCTGCACA CATCCCCTTT 
    CATCTCACGT AAACCACTGT TATCACCACA GTCGTTCACT GGGTTTCTCA 
    AGTGTCTCAA GTTCTCGTCG CATGTATTCC TCTGATGCTA GAGCCAAGCC 
    AGAAGATTAC AAAAATGCTA TGGCCAAAGT TTCTTCTACA GAAACTTCTG 
    AAGTCGGCGC CACAGATCAC AGTGGCAACA CTTGGATTGA TATTTTAGAT 
    AGTGCCCGTC ACTCTACCAT AGATGCTACT GCAGCCGCAC TTAAGAAACT 
    GAAGGCGATG ACTGATCCAA TTGTACCTTG CATCCAGGAG TTATATGCTA 
    CCTATCCAGA TCTACAGAGG ATGGTCATCC CACTTGGTGG GACACTGATG 
    GGTACAGCAG TTGCATGGTT TGTGATGCCT ATTGTTCTAA GGAAGCTCCA 
    CAAGTACACT TCAGAAAATC CTCTCATAAC GCTTGAAGGG GAGTCAACTA 
    AGAAATACAT GTCCTATCAA ACAAGCTTGT GGAGTGCATT GGAAGATCCT 
    GCAAAATGTA TTATCACTTT TATGGCATTT TCACAGATGG CTGCAATTGT 
    TGTGCCAAGT ATTTCAGTTT ATCTTCCACA GGCATGGAGA GGAACATTTG 
    TTGTATCTCT TCTGTGGTTT CTTCAGAAGT GGAAAACTAA CTTCATTGCT 
    AATATTATGA CCAATCAATC TGCTATAGGG ATGGACAGAG ACAGATTGTT 
    AACATTTGAT AAGGTGTCAT CGTTAGCACT AATTGCACTT GGAGGAATGG 
    CTCTTGCTGA AGCTTGCGGT GTACCTGTGC AGTCAATATT GACTGTTGGT 
    GGTGTCGGAG GTGTTGCTAC TGCTTTTGCT GCTAGAGATG TCTTAGGTAA 
    CATACTGAGT GGGCTCTCTC TACAATTTTC AAAGCCATTC TTGGTTGGGG 
    ATAACATAAA GGCTGGGTCA ATAGAAGGAA AAGTTATTGA AATTGGACTG 
    ACATCCACGT TATTGATTAA CCCAGAAAAC CTCCCTGTTG TAGTTCCTAA 
    CTCACTGTTC TCCAGCCAAA TTATAGTCAA TAAATCAAGA GCTGTGTGGC 
    GTGCTAGGGT GGTAAAAATT CCTGTTATAA TTGAAGACCT TGAAAAGATT 
    CCTACTATAT CAGAGGAGAT AAAAGTGAAG TTAAGGTCCA ACCCAAACAT 
    TGATGCTCCT TACTGCTATC TCTCACGGTT AGAAAGTTCA CATGGAGAGC 
    TTACCATTGG TTGCAACATC AAAAGCATGA GAAGAGACGA ATGGACAACA 
    GTGGAACAAG ATATTCTTTT GAAAGCTGCC AGCATTGTCA AGCAATACGA 
    ATCTTGAACT TGCGAGCACA TTACAGTTCT GTTCTATCCC TCTCCATTTT 
    ACTGCGAGAA GAGGTTAAAG TGGTTACTCT TTTTCTAGTT TGGTATGGGT 
    ATATGGGACT GTAAATAGAG TTCTCATGTC CCATACTCTA ATGTTTTGAT 
    CACATGTGCC ATATGCCTTT CCTATTTAAG GAAGTGACCC TTTGTCATCC 
    TACTGTTACA TGGATACAAG AAAAGGAGAT GAAAGATGAA TCACC

    Gene models with high sequence identity

    1. AT4G00290.1 [+] show detail - Mechanosensitive ion channel protein
      E-value: 5e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Like-Sm ribonucleoprotein (LSM)-related domain 6e-18
    superfamily Mechanosensitive ion channel MscS, transmembrane-2 3e-11
    HMMPfam Mechanosensitive ion channel MscS 5.6e-33

    See the detailed result >

    AT4G00290.1

    Model type
    Protein coding
    Short Description
    Mechanosensitive ion channel protein
    Computational Description
    Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR