K23023

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23023

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23023

Determination of introduced cDNA(s)

  • J023013D19 - Rice Full-length cDNAs - Original: J023013D19

    full reading [+] show sequence

    Nucleotide sequence: J023013D19 - full reading 
    GGTTCTCCTC CCTCCAATCC GCCATGGCGG CGCCCAAGCC ACTGTCCCCG 
    CGCCTCGCCG TCCCGCTCGC CATTGCTCTC CTCCTCGCCC TCGGCCTCGT 
    CGCCGACTTC CTCTGGTCAT CATCTTCCTC CTCTGGCACC TCCGGCCGCG 
    GCCAGCTCGC CTCCGCTTCC AGGACGGCAA CGGCGAAGAA GAGCGGTAGG 
    GCGCGCGGGA AGAAGCCGGC GGCGGAGGGC TACCTCAATG CGACGTACGC 
    CGACATACCG GCGCCGCGGT GGGACTGGGA GGAGATGCCG GCGGCGCCCG 
    TGCCCCGCCT CGACGGCTAC TCCGTCCAGA TCGGCGACCT GCTCTACGTC 
    TTCGCAGGGT ACGAGAACCT CGACCATGTG CATTCTCATG TTGATGTGTA 
    CAATTTCACT TCCAACACAT GGACGGGGAG GTTTGATATG CCCAAGGAGA 
    TGGCAAATTC ACATCTAGGA ATAGCAACAG ATGGGAGGTA CATTTACGCG 
    CTGACCGGGC AATTCGGTCC CCAGTGCCGA TCACCTATAA ACCGCAACTT 
    CGTTGTAGAC ACAGTGACAA AAGAGTGGCA TGAACTGCCC CCTTTGCCAG 
    TTCCTAGGTA TGCACCCGCT ACTCAACTTT GGCGTGGACG GCTCCATGTG 
    ATGGGTGGTG GAAAAGAAGA TCGCCATGAA CCTGGATTAG AGCACTGGAG 
    CTTAGCTGTC AAGGATGGCA AAGCATTGGA GAATGAGTGG CGAACTGAGA 
    TAGCCATACC CCGTGGTGGA CCTCATAGGG CATGCATTGT TGCTAATGAT 
    AAACTCTTTG TCATTGGCGG TCAAGAGGGA GACTTCATGG CAAAACCAGG 
    CTCGCCGATA TTTAAATGTG TACGGAGGCA TGAGGTTGTG TACGGTGATG 
    TGTATATGCT AGATGATGGA AATAAATGGA AGCAACTATC TCCACTGCCA 
    AAGCCAAATT CCCACATAGA GTGTGCATGG GTTATAGTTA ATAACTCTGT 
    AATAATTGTT GGTGGAACTA CGGAAAAGCA TCCTATTACC AAAAAGATGA 
    TTCTTGTCGG TGAAGTTTTC CGGTTCGATT TGGATACACT GACATGGTCA 
    GTCATTGGCC GCATGCCTTT CCGAATCAAG ACGGCCCTAG CTGGTTACTG 
    GGATGGTTGG CTCTATTTCA CTTCTGGGCA GCGAGATAGG GGGCCTGATA 
    ATCCTGCTCC AAAGAAAGTT GTTGGTTGCA CGTGGAGAAC AAAACTACAC 
    CTTTGATGTG GAAAGTTTTA GCTGTTGTTA CTGTAGATTA TAGGTCAGTA 
    TCTGTTTCCC TTTTCTAACT GCTAGGCTCT CCAGAAGCTA TTTTTGTCCT 
    GTATTTTGTA TGATAGATTG ACTTCTGATT CATAGTGTCC TTGTTGTCTA 
    TATTGTTGTG CATCCACATT TCCTAGATGA ATTTCTTGCC ATGTTCTTCT 
    AAATGGCCAG AATATAATAT ATTAACACAA TCATTTTGCT

    Gene models with high sequence identity

    1. AT1G51540.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 1e-150; Score: 530.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Kelch-type beta propeller 4.9e-39
    HMMSmart Kelch repeat type 1 0.23
    HMMSmart Kelch repeat type 1 0.88
    HMMSmart Kelch repeat type 1 2.7
    superfamily Galactose oxidase/kelch, beta-propeller 2.3e-36
    HMMPanther KELCH-RELATED 9.2e-17
    HMMPanther Kelch related 9.2e-17

    See the detailed result >

    AT1G51540.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G27220.1); Has 1998 Blast hits to 1729 proteins in 252 species: Archae - 27; Bacteria - 371; Metazoa - 1276; Fungi - 25; Plants - 123; Viruses - 45; Other Eukaryotes - 131 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR