K23024

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23024

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23024

Determination of introduced cDNA(s)

  • J023026N03 - Rice Full-length cDNAs - Original: J023026N03

    full reading [+] show sequence

    Nucleotide sequence: J023026N03 - full reading 
    GCCCCCCTCC GCCTCGCACT CTCTCTCGCT ATAGCCTATA GCGTCTCTCC 
    CGAAGGCTCG AGACACCACA CCTCTCTTCT CTTTGGCTCC TCTCATCGCT 
    GCATTGCGAT CCCAAGAGCT GTGAGCTTTA GGAGCTTGTT CATCACGACC 
    TGAAAATCAT GGAGTTCGAA GACCGCTGCC ACAAGGTCCA GGAGCCCAAA 
    TTCGACTGCC TGCTGTTTGA CCTCGATGAC ACTCTGTACC CACTGAGCTC 
    GGGGATCGCG TCCCATGTCA AGAAGAACAT TGGAGATTAC ATGGTTGAGA 
    AGCTGGGTAT TGAGGAGAGC AAGATTGAGA ACCTTGGCAA TCTGCTGTAC 
    AAGAACTACG GCACGACGAT GGCCGGACTC AGGGCAATAG GCTACAGCTT 
    CGATTACGAT GAGTACCACA GTTTTGTCCA TGGAAGACTG CCCTACGAGA 
    ACATCAAGCC GGACCCTGTC CTGAAGCACA TTCTCAAGAA CCTGCGCATC 
    CGCAAACTCA TATTCACCAA CGGCGACAAG GACCACGCCG TGAGAGCCCT 
    CAAGAGGCTG GGGCTGGAGG ACTGCTTCGA GGGGATCATC TGCTTCGAGA 
    CCCTCAACCC GCCGTGCCCG TCGCCGCCGT GCGACGGGGA GGCCAGCATC 
    TTCGACATCG CCGGACACTT CTCCATGCCC GGCGCCGCCG CCGACGAGCT 
    TCCCAGGACA CCCGTCCTCT GCAAGCCCAA CGTCGACGCC ATGGAGGAGG 
    CCCTCAGGAT CGCCAACGTG AACCCTCACA AGGCGATTTT CTTCGACGAC 
    AGCGTGAGGA ACATCCAGGC GGGGAAGAGG ATCGGGCTCC ACACGGTGCT 
    GGTGGGCACG CCGCAGCGGG TGAAGGGCGC GGACCACGCG CTGGAGAGCA 
    TCCACAACAT CAGGGAGGCG CTGCCGGAGC TGTGGGAGGA GGCCGAGAAG 
    GCGGAGGACG TGCTCATCTA CTCCGACCGC GTCGCCATCG AGACATCGGT 
    GACCGCGTAG GCCACACCTA CTGTCTCTCC CGACTCCGGC GAATCGCTCA 
    GAACGAGCAA CCATCCATCC ATCCATGTCC ATCCCTGGCC GGGCAGGTGA 
    TCATCAGGTG GGAATTCAGA ATTGGCCGGG ACAACAATAC GTTCCAAGAA 
    AAAAAGAGGA GGGTGTTCCG TGGAAGTTCA GGATTCAGAA TGTAACAGCA 
    ATGTTGGAAC GGGTCCTGTA GTATATATAT GTATCGGTCA GATCTTTGCA 
    TGTAAATTAG TACTCCTAGA AGCAATAATA ATAATAATTA ATAAAGAGAA 
    TGGGGGTTAT TTATCACTTC TTGATTGTGT ATTTATCTCT CGTGTTTAAC 
    TGAAGCTCTG AAGGATTTTT ATTAGCCC

    Gene models with high sequence identity

    1. AT5G02230.2 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 2e-90; Score: 330.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily HAD-like 3.7e-30
    HMMTigr Pyrimidine 5-nucleotidase 6.2e-93
    HMMTigr HAD-superfamily hydrolase, subfamily IA, variant 3 1.6e-08
    Gene3D no description 2.1e-06
    HMMPanther 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 4.4e-07
    HMMPfam Haloacid dehalogenase-like hydrolase 5.2e-09

    See the detailed result >

    AT5G02230.2

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Computational Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR